CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0951000

Gene name
Homology with Arabidopsis Similar to At5g13480: FY (HF=3e-57)

Module size 8 genes

NF 0.51

%ile 68.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.71 89.6 0.96 Os01g0951000 AK111493.1 - The start codon is not identified. 3e-57 At5g13480 FY O.I. H.G. S.X.
0.71 89.6 0.97 Os08g0531200 AK120362.1 - WD40-like domain containing protein 4e-4 At2g47450 CAO (CHAOS) O.I. H.G. S.X.
0.53 71.3 0.96 Os01g0746200 AK072636.1 - Nup85 nucleoporin family protein 4e-7 At4g32910 - O.I. H.G. S.X.
0.48 63.7 0.96 Os01g0375100 AK102596.1 - DnAJ-like protein slr0093 5e-1 At4g12540 unknown protein O.I. H.G. S.X.
0.46 60.9 0.97 Os11g0643700 CB632735 - Nuclear pore protein 84/107 family protein 6e+0 Atmg00150 - O.I. H.G. S.X.
0.44 58.1 0.96 Os03g0423800 AK069431.1 - Conserved hypothetical protein 3e-1 At2g03070 unknown protein O.I. H.G. S.X.
0.39 48.3 0.96 Os11g0572100 AB109200.1 - DNA ligase (EC 6.5.1.2) 1e-20 At5g22010 AtRFC1 (replication factor C 1) O.I. H.G. S.X.
0.39 48.3 0.96 Os08g0335000 CF330163 - Pre-mRNA splicing factor RNA helicase PRP43(Helicase JA1) 8e-21 At1g32490 ESP3 (ENHANCED SILENCING PHENOTYPE 3) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
20.9 99.2 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
19.2 99.0 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
17.0 98.8 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.9 98.7 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.5 98.7 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.4 98.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.4 98.7 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.3 98.7 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.8 98.5 GSM195220 stigma 3, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
13.4 98.5 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.222 1 GO:0001700 The process whose specific outcome is the progression of the embryo over time, from zygote formation through syncytial blastoderm to the hatching of the first instar larva. An example of this process is found in Drosophila melanogaster.
0.222 1 GO:0031124 Any process involved in forming the mature 3' end of an mRNA molecule.
0.200 1 GO:0009909 Any process that modulates the frequency, rate or extent of flower development.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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