CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0947700

Gene name
Homology with Arabidopsis Similar to At5g66780: unknown protein (HF=4e-1)

Module size 9 genes

NF 0.61

%ile 83.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.52 69.6 0.82 Os01g0947700 AK066757.1 - Beta-1,3-glucanase 4e-1 At5g66780 unknown protein O.I. H.G. S.X.
0.71 89.6 0.87 Os05g0547100 AK121657.1 - Conserved hypothetical protein 4e+0 At3g19220 SCO2 (SNOWY COTYLEDON 2) O.I. H.G. S.X.
0.70 88.4 0.87 Os09g0427300 AK121239.1 - Hypothetical protein 3e+0 At3g49540 unknown protein O.I. H.G. S.X.
0.67 87.2 0.86 Os10g0446800 AK099349.1 - Conserved hypothetical protein 4e-2 At5g08400 unknown protein O.I. H.G. S.X.
0.64 83.4 0.87 Os08g0534900 AK101573.1 - ARM repeat fold domain containing protein 9e-1 At3g46150 unknown protein O.I. H.G. S.X.
0.56 76.3 0.87 Os01g0553400 AK102543.1 - Cyclin-like F-box domain containing protein 9e-1 At1g23820 SPDS1 (spermidine synthase 1) O.I. H.G. S.X.
0.53 71.3 0.89 Os03g0390900 AK068299.1 - - 8e-5 At5g22790 RER1 (RETICULATA-RELATED 1) O.I. H.G. S.X.
0.52 69.6 0.87 Os03g0779000 NM_184984.1 - Conserved hypothetical protein 2e+0 At3g25200 unknown protein O.I. H.G. S.X.
0.42 53.9 0.88 Os08g0263300 AK067503.1 - Conserved hypothetical protein 4e-6 At4g05060 vesicle-associated membrane family protein / VAMP family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
57.6 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
36.9 99.8 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
17.0 98.8 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
15.8 98.7 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.7 98.2 GSM100446 Rice Bala 1ppm Arsenate Rep2 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
8.2 97.7 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.2 97.4 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.6 97.3 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.5 97.2 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.3 97.2 GSM100445 Rice Bala 1ppm Arsenate Rep1 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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