CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0946800

Gene name
Homology with Arabidopsis Similar to At4g26230: 60S ribosomal protein L31 (RPL31B) (HF=4e-1)

Module size 6 genes

NF 0.47

%ile 61.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.56 76.3 0.99 Os01g0946800 NM_186132.1 - Cold shock protein-1 4e-1 At4g26230 60S ribosomal protein L31 (RPL31B) O.I. H.G. S.X.
0.46 60.9 0.99 Os10g0344600 NM_195889.1 - - 5e-1 At5g33370 GDSL-motif lipase/hydrolase family protein O.I. H.G. S.X.
0.44 58.1 0.99 Os02g0684200 9630.m05881 - Hypothetical protein 7e-1 At4g32970 unknown protein O.I. H.G. S.X.
0.42 53.9 0.99 Os07g0533700 NM_185837.1 - - 5e+0 At5g01610 unknown protein O.I. H.G. S.X.
0.40 51.1 0.99 Os06g0329100 9634.m02193 - - 4e-1 At4g11570 haloacid dehalogenase-like hydrolase family protein O.I. H.G. S.X.
0.40 51.1 0.99 Os08g0209400 9636.m01051 - - 4e+0 At2g03600 ATUPS3 (Arabidopsis thaliana ureide permease 3) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
50.4 99.9 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
44.2 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
30.5 99.7 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
14.4 98.6 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.1 98.5 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.5 98.5 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.9 98.4 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.3 98.3 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.0 98.3 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7 98.2 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.020 1 GO:0006278 The process whereby new strands of DNA are synthesized, using RNA as a template for RNA-dependent DNA polymerases (e.g. reverse transcriptase) that synthesize the new strands.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage