CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0944700

Gene name
Homology with Arabidopsis Similar to At5g20560: beta-1,3-glucanase, putative (HF=1e-2)

Module size 6 genes

NF 0.67

%ile 90.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.71 89.6 0.68 Os01g0944700 AF443600.1 - Glucan endo-1,3-beta-glucosidase GII precursor (EC3.2.1.39) ((1->3)- beta-glucan endohydrolase GII)((1->3)-beta-glucanase isoenzyme GII)(Beta-1,3-endoglucanase GII) 1e-2 At5g20560 beta-1,3-glucanase, putative O.I. H.G. S.X.
0.83 95.8 0.72 Os04g0493400 AB003194.1 - Endochitinase A precursor (EC 3.2.1.14) (Seedchitinase A) 4e-2 At3g54420 ATEP3 O.I. H.G. S.X.
0.80 94.6 0.76 Os04g0494100 AB096140.1 - Endochitinase A precursor (EC 3.2.1.14) (Seedchitinase A) 1e-1 At2g43590 chitinase, putative O.I. H.G. S.X.
0.80 94.6 0.79 Os01g0382400 AK121108.1 - Pathogenesis-related protein PRB1-2 precursor 1e-1 At3g09590 pathogenesis-related protein, putative O.I. H.G. S.X.
0.67 87.2 0.76 Os03g0624300 AK062353.1 - Hypothetical protein 1e+0 At5g43211 unknown protein O.I. H.G. S.X.
0.20 16.5 0.68 Os11g0170900 AK067523.1 - Conserved hypothetical protein 1e+0 At3g63080 ATGPX5 (glutathione peroxidase 5) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
149.2 100.0 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
31.9 99.7 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
20.8 99.2 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
9.1 97.9 GSM195229 Endosperm GSE7951 Genome-wide gene expression profiling of rice stigma
7.8 97.6 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.9 97.3 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.1 97.1 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.8 97.0 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.8 97.0 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.7 96.9 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.211 2 GO:0006032 The chemical reactions and pathways resulting in the breakdown of chitin, a linear polysaccharide consisting of P-1,4-linked N-acetyl-D-glucosamine residues.
0.211 2 GO:0051707 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from another living organism.
0.154 2 GO:0016998 The chemical reactions and pathways resulting in the breakdown of macromolecules that form part of a cell wall.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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