Co-expression analysis

Gene ID Os01g0927600
Gene name
Homology with ArabidopsisSimilar to At5g62000: ARF2 (AUXIN RESPONSE FACTOR 2) (HF=6e-28)
Module size 6 genes
NF 0.19
%ile 16.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5371.30.92Os01g0927600AK072309.1-AUX/IAA protein family protein6e-28At5g62000ARF2 (AUXIN RESPONSE FACTOR 2)O.I.H.G.S.X.
0.3134.50.95Os01g0872700AK100381.1-Putative 5-3 exonuclease domain containing protein2e-19At1g75660XRN3O.I.H.G.S.X.
0.2321.20.94Os06g0111400AK069834.1-Guanine nucleotide binding protein (G-protein),alpha subunit family protein7e-40At1g31930XLG3 (extra-large GTP-binding protein 3)O.I.H.G.S.X.
0.2219.40.93Os05g0411300AK073142.1-Conserved hypothetical protein1e-3At3g56660BZIP49 (BASIC REGION/LEUCINE ZIPPER MOTIF PROTEIN 49)O.I.H.G.S.X.
0.149.30.92Os08g0492100AK071053.1-Paraneoplastic encephalomyelitis antigen familyprotein5e-8At3g13224RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.094.90.93Os01g0911100AK062123.1-ATP-dependent RNA helicase-like protein1e-17At5g63120ethylene-responsive DEAD box RNA helicase, putative (RH30)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.098.6GSM195220stigma 3, biological rep 2GSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
14.798.6GSM377072Genomic DNA - 45 day old leaf sample - mutant d1137GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
14.498.6GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
13.398.4GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
12.798.4GSM195219stigma 2, biological rep 2GSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
12.098.3GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.898.3GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.598.2GSM195218stigma 1, biological rep1GSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
11.298.2GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.598.1GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.2221GO:0009725A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus.Link to AmiGO
0.1541GO:0006417Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA.Link to AmiGO
0.0711GO:0007186The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand.Link to AmiGO

Inter-species module comparison

A co-expression module including the maize gene, Zm.4931.1.A1_at, orthologous to the query gene, Os01g0927600

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5976.1Zm.4931.1.A1_atAt5g62000hypothetical protein LOC100273501-3e-26At5g62000ARF2 (AUXIN RESPONSE FACTOR 2)O.I.H.G.S.X.
0.3538.9Zm.5851.8.A1_x_atAt5g62000MADS box protein-1e-7At4g18960AG (AGAMOUS)O.I.H.G.S.X.
0.3233.4Zm.5563.1.A1_atAt5g62000hypothetical protein LOC100272774-1e-2At4g35730unknown proteinO.I.H.G.S.X.
0.3029.8Zm.5048.7.A1_a_atAt5g62000hypothetical protein LOC100280264-3e-11At5g0709040S ribosomal protein S4 (RPS4B)O.I.H.G.S.X.
0.2928.1Zm.18268.1.A1_atAt5g62000hypothetical LOC542182-2e-8At5g45290zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.2521.3Zm.3398.1.A1_atAt5g62000ATGP4-5e-1At3g26980MUB4 (MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 4 PRECURSOR)O.I.H.G.S.X.
0.2521.3Zm.3254.1.S1_atAt5g62000hypothetical protein LOC100274018-3e-3At3g14090ATEXO70D3 (exocyst subunit EXO70 family protein D3)O.I.H.G.S.X.
0.2521.3Zm.16811.1.S1_atAt5g62000hypothetical protein LOC100192683-2e-1At2g10920unknown proteinO.I.H.G.S.X.
0.2216.9Zm.14473.3.A1_atAt5g62000--3e-14At4g34110PAB2 (POLY(A) BINDING 2)O.I.H.G.S.X.
0.2216.9Zm.14907.1.A1_atAt5g62000hypothetical protein LOC100279699-2e+0At5g4770060S acidic ribosomal protein P1 (RPP1C)O.I.H.G.S.X.
0.2216.9Zm.14051.1.S1_atAt5g62000hypothetical protein LOC100217091-5e-1At5g38650proteasome maturation factor UMP1 family proteinO.I.H.G.S.X.
0.2115.5Zm.9587.1.A1_atAt5g62000--5e+0At5g54062unknown proteinO.I.H.G.S.X.
0.1811.6Zm.10422.1.S1_atAt5g62000hypothetical protein LOC100275624-4e+0At2g14846protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.
0.158.6Zm.6788.1.A1_atAt5g62000Zea floricaula/leafy1-5e+0At5g59160TOPP2O.I.H.G.S.X.
0.147.7Zm.2667.1.A1_atAt5g62000signal transducer-3e-2At3g44750HDA3 (HISTONE DEACETYLASE 3)O.I.H.G.S.X.
0.115.3Zm.9603.1.A1_atAt5g62000--1e+0At4g15715-O.I.H.G.S.X.
0.094.0Zm.5802.1.A1_atAt5g62000hypothetical protein LOC100193125-2e+0At4g31450zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.083.4Zm.17921.1.A1_atAt5g62000hypothetical protein LOC100273158-1e-8At1g20110zinc finger (FYVE type) family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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