CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0922700

Gene name
Homology with Arabidopsis Similar to At1g27760: interferon-related developmental regulator family protein / IFRD protein family (HF=7e-2)

Module size 6 genes

NF 0.51

%ile 67.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.85 Os01g0922700 9629.m06891 - Hypothetical protein 7e-2 At1g27760 interferon-related developmental regulator family protein / IFRD protein family O.I. H.G. S.X.
0.57 77.0 0.87 Os04g0675400 AK068186.1 - Heat shock protein DnaJ family protein 9e-1 At2g28710 zinc finger (C2H2 type) family protein O.I. H.G. S.X.
0.40 51.1 0.92 Os08g0425200 AK099569.1 - Conserved hypothetical protein 1e-1 At4g11870 unknown protein O.I. H.G. S.X.
0.40 51.1 0.93 Os01g0784700 AY327041.1 - Receptor-like kinase 2e-6 At4g21380 ARK3 (A. THALIANA RECEPTOR KINASE 3) O.I. H.G. S.X.
0.33 38.8 0.89 Os02g0774100 9630.m05279 - Thioredoxin-related domain containing protein 4e-3 At5g06690 WCRKC1 (WCRKC THIOREDOXIN 1) O.I. H.G. S.X.
0.31 34.5 0.90 Os01g0945300 AK065371.1 - Amino acid/polyamine transporter I family protein 7e-17 At2g01170 BAT1 (BIDIRECTIONAL AMINO ACID TRANSPORTER 1) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
34.2 99.8 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
23.5 99.4 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.9 98.4 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.6 98.2 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.4 98.2 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.1 98.2 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.8 98.1 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.8 98.1 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.8 98.1 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.7 98.1 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.042 1 GO:0006865 The directed movement of amino acids, organic acids containing one or more amino substituents, into, out of, within or between cells.
0.024 1 GO:0006457 The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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