CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0914400

Gene name
Homology with Arabidopsis Similar to At4g12970: unknown protein (HF=6e-3)

Module size 6 genes

NF 0.69

%ile 92.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.92 Os01g0914400 AK063138.1 - Conserved hypothetical protein 6e-3 At4g12970 unknown protein O.I. H.G. S.X.
0.67 87.2 0.94 Os02g0756100 AK060615.1 - Conserved hypothetical protein 2e+0 At3g12140 emsy N terminus domain-containing protein / ENT domain-containing protein O.I. H.G. S.X.
0.67 87.2 0.94 Os11g0308800 AK068828.1 - Protein kinase-like domain containing protein 5e-1 At3g56800 CAM3 (CALMODULIN 3) O.I. H.G. S.X.
0.67 87.2 0.94 Os03g0320800 AK103265.1 - Protein kinase domain containing protein 3e-2 At4g34670 40S ribosomal protein S3A (RPS3aB) O.I. H.G. S.X.
0.46 60.9 0.92 Os06g0217900 AK103765.1 - Cyclin, C-terminal domain containing protein 8e-1 At4g14520 DNA-directed RNA polymerase II-related O.I. H.G. S.X.
0.46 60.9 0.94 Os01g0631700 AK065494.1 - Ser Thr specific protein kinase-like protein 9e-23 At2g42960 protein kinase family protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
18.8 99.0 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.1 98.7 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.8 98.7 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.5 98.7 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.2 98.7 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.1 98.6 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.5 98.5 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.0 98.4 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.9 98.4 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.9 98.4 GSM100446 Rice Bala 1ppm Arsenate Rep2 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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