CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0905800

Gene name
Homology with Arabidopsis Similar to At3g52930: fructose-bisphosphate aldolase, putative (HF=6e-20)

Module size 6 genes

NF 0.25

%ile 24.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.61 81.2 0.93 Os01g0905800 AK073770.1 - Aldolase C-1 6e-20 At3g52930 fructose-bisphosphate aldolase, putative O.I. H.G. S.X.
0.46 60.9 0.93 Os02g0601300 AK099086.1 - - 1e-166 At3g04120 GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1) O.I. H.G. S.X.
0.36 44.0 0.93 Os12g0145700 AK071391.1 - Pyruvate kinase family protein 2e-63 At3g52990 pyruvate kinase, putative O.I. H.G. S.X.
0.19 15.1 0.94 Os06g0194900 AK119193.1 - Sucrose synthase 1 (EC 2.4.1.13) (Sucrose-UDPglucosyltransferase 1) 3e-60 At5g20830 SUS1 (SUCROSE SYNTHASE 1) O.I. H.G. S.X.
0.13 8.2 0.92 Os03g0248600 AK073611.1 - Enolase 2 (EC 4.2.1.11) (2-phosphoglyceratedehydratase 2) (2-phospho- D-glycerate hydro-lyase 2) 5e-98 At2g36530 LOS2 O.I. H.G. S.X.
0.11 6.5 0.94 Os04g0462500 U65956.1 - 14-3-3-like protein GF14-6 2e-57 At3g02520 GRF7 (GENERAL REGULATORY FACTOR 7) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
23.5 99.4 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
22.3 99.3 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
22.2 99.3 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
6.8 97.3 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.4 97.2 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.0 97.0 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.0 97.0 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.9 97.0 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.6 96.9 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.5 96.8 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.167 1 GO:0006006 The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides.
0.087 2 GO:0006096 The chemical reactions and pathways resulting in the breakdown of a monosaccharide (generally glucose) into pyruvate, with the concomitant production of a small amount of ATP. Pyruvate may be converted to ethanol, lactate, or other small molecules, or fed into the TCA cycle.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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