CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0899800

Gene name
Homology with Arabidopsis Similar to At1g51190: PLT2 (PLETHORA 2) (HF=6e-30)

Module size 25 genes

NF 0.39

%ile 47.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.96 99.7 0.95 Os01g0899800 9629.m06698 - ANT (Ovule development protein aintegumenta) 6e-30 At1g51190 PLT2 (PLETHORA 2) O.I. H.G. S.X.
0.64 83.4 0.96 Os02g0517150 9630.m02996 - - 7e-8 At3g11420 fringe-related protein O.I. H.G. S.X.
0.60 79.7 0.97 Os02g0245600 9630.m01383 - - 3e-1 At5g60680 unknown protein O.I. H.G. S.X.
0.58 77.0 0.98 Os07g0522100 9635.m03329 - - 8e-2 At1g12665 - O.I. H.G. S.X.
0.51 68.7 0.96 Os02g0748400 9630.m05045 - - 3e+0 At1g63930 unknown protein O.I. H.G. S.X.
0.51 68.7 0.97 Os12g0214600 9640.m01065 - - 5e+0 At4g00810 60S acidic ribosomal protein P1 (RPP1B) O.I. H.G. S.X.
0.50 68.0 0.98 Os12g0594100 9640.m03935 - - 6e-2 At5g11930 glutaredoxin family protein O.I. H.G. S.X.
0.46 60.9 0.97 Os07g0177900 9635.m00757 - - 3e+0 At1g04000 unknown protein O.I. H.G. S.X.
0.45 58.8 0.97 Os10g0538001 9638.m03547 - - 8e-1 At3g03020 unknown protein O.I. H.G. S.X.
0.45 58.8 0.97 Os10g0435700 9638.m02560 - - 3e+0 At4g11870 unknown protein O.I. H.G. S.X.
0.44 58.1 0.97 Os02g0586600 9630.m03584 - - 4e+0 At3g56490 zinc-binding protein, putative / protein kinase C inhibitor, putative O.I. H.G. S.X.
0.41 52.4 0.97 Os06g0235100 9634.m01273 - - 6e-1 At1g62333 unknown protein O.I. H.G. S.X.
0.41 52.4 0.97 Os06g0171000 9634.m00675 - - 1e+0 At1g11520 pliceosome associated protein-related O.I. H.G. S.X.
0.40 51.1 0.97 Os05g0510600 9633.m04048 - Tryptophan decarboxylase 8e-1 At5g66380 ATFOLT1 (ARABIDOPSIS THALIANA FOLATE TRANSPORTER 1) O.I. H.G. S.X.
0.39 48.3 0.98 Os06g0223000 9634.m01167 - Syntaxin, N-terminal domain containing protein 2e+0 At1g07950 surfeit locus protein 5 family protein / SURF5 family protein O.I. H.G. S.X.
0.36 44.0 0.96 Os03g0603100 9631.m03906 - Cytochrome P-450 2e+0 At5g11930 glutaredoxin family protein O.I. H.G. S.X.
0.35 41.7 0.96 Os07g0603700 9635.m04126 - E-class P450, group I family protein 4e-12 At1g01190 CYP78A8 O.I. H.G. S.X.
0.34 40.0 0.98 Os03g0775900 NM_184907.1 - - 3e+0 At4g24026 unknown protein O.I. H.G. S.X.
0.33 38.8 0.97 Os03g0233100 9631.m01234 - - 6e+0 At2g28710 zinc finger (C2H2 type) family protein O.I. H.G. S.X.
0.28 31.1 0.97 Os06g0175400 NM_185681.1 - BSD domain containing protein 6e-1 At4g39260 GR-RBP8 O.I. H.G. S.X.
0.27 27.5 0.97 Os06g0327400 9634.m02171 - - 6e-2 At5g67060 HEC1 (HECATE 1) O.I. H.G. S.X.
0.26 25.6 0.97 Os11g0149800 9639.m00439 - - 2e+0 At3g17160 unknown protein O.I. H.G. S.X.
0.23 21.2 0.97 Os07g0235101 NM_186702.1 - - 9e+0 At4g39970 haloacid dehalogenase-like hydrolase family protein O.I. H.G. S.X.
0.22 19.4 0.97 Os07g0139900 9635.m00404 - - 3e-1 At2g36010 E2F3 (E2F TRANSCRIPTION FACTOR 3) O.I. H.G. S.X.
0.16 11.3 0.96 Os04g0341900 9632.m02582 - - 3e-2 At5g05790 myb family transcription factor O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.96	99.7	0.95	Os01g0899800	9629.m06698	-	ANT (Ovule development protein aintegumenta)	6e-30	At1g51190	PLT2 (PLETHORA 2)	O.I.	H.G.	S.X.
0.64	83.4	0.96	Os02g0517150	9630.m02996	-	-	7e-8	At3g11420	fringe-related protein	O.I.	H.G.	S.X.
0.60	79.7	0.97	Os02g0245600	9630.m01383	-	-	3e-1	At5g60680	unknown protein	O.I.	H.G.	S.X.
0.58	77.0	0.98	Os07g0522100	9635.m03329	-	-	8e-2	At1g12665	-	O.I.	H.G.	S.X.
0.51	68.7	0.96	Os02g0748400	9630.m05045	-	-	3e+0	At1g63930	unknown protein	O.I.	H.G.	S.X.
0.51	68.7	0.97	Os12g0214600	9640.m01065	-	-	5e+0	At4g00810	60S acidic ribosomal protein P1 (RPP1B)	O.I.	H.G.	S.X.
0.50	68.0	0.98	Os12g0594100	9640.m03935	-	-	6e-2	At5g11930	glutaredoxin family protein	O.I.	H.G.	S.X.
0.46	60.9	0.97	Os07g0177900	9635.m00757	-	-	3e+0	At1g04000	unknown protein	O.I.	H.G.	S.X.
0.45	58.8	0.97	Os10g0538001	9638.m03547	-	-	8e-1	At3g03020	unknown protein	O.I.	H.G.	S.X.
0.45	58.8	0.97	Os10g0435700	9638.m02560	-	-	3e+0	At4g11870	unknown protein	O.I.	H.G.	S.X.
0.44	58.1	0.97	Os02g0586600	9630.m03584	-	-	4e+0	At3g56490	zinc-binding protein, putative / protein kinase C inhibitor, putative	O.I.	H.G.	S.X.
0.41	52.4	0.97	Os06g0235100	9634.m01273	-	-	6e-1	At1g62333	unknown protein	O.I.	H.G.	S.X.
0.41	52.4	0.97	Os06g0171000	9634.m00675	-	-	1e+0	At1g11520	pliceosome associated protein-related	O.I.	H.G.	S.X.
0.40	51.1	0.97	Os05g0510600	9633.m04048	-	Tryptophan decarboxylase	8e-1	At5g66380	ATFOLT1 (ARABIDOPSIS THALIANA FOLATE TRANSPORTER 1)	O.I.	H.G.	S.X.
0.39	48.3	0.98	Os06g0223000	9634.m01167	-	Syntaxin, N-terminal domain containing protein	2e+0	At1g07950	surfeit locus protein 5 family protein / SURF5 family protein	O.I.	H.G.	S.X.
0.36	44.0	0.96	Os03g0603100	9631.m03906	-	Cytochrome P-450	2e+0	At5g11930	glutaredoxin family protein	O.I.	H.G.	S.X.
0.35	41.7	0.96	Os07g0603700	9635.m04126	-	E-class P450, group I family protein	4e-12	At1g01190	CYP78A8	O.I.	H.G.	S.X.
0.34	40.0	0.98	Os03g0775900	NM_184907.1	-	-	3e+0	At4g24026	unknown protein	O.I.	H.G.	S.X.
0.33	38.8	0.97	Os03g0233100	9631.m01234	-	-	6e+0	At2g28710	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.
0.28	31.1	0.97	Os06g0175400	NM_185681.1	-	BSD domain containing protein	6e-1	At4g39260	GR-RBP8	O.I.	H.G.	S.X.
0.27	27.5	0.97	Os06g0327400	9634.m02171	-	-	6e-2	At5g67060	HEC1 (HECATE 1)	O.I.	H.G.	S.X.
0.26	25.6	0.97	Os11g0149800	9639.m00439	-	-	2e+0	At3g17160	unknown protein	O.I.	H.G.	S.X.
0.23	21.2	0.97	Os07g0235101	NM_186702.1	-	-	9e+0	At4g39970	haloacid dehalogenase-like hydrolase family protein	O.I.	H.G.	S.X.
0.22	19.4	0.97	Os07g0139900	9635.m00404	-	-	3e-1	At2g36010	E2F3 (E2F TRANSCRIPTION FACTOR 3)	O.I.	H.G.	S.X.
0.16	11.3	0.96	Os04g0341900	9632.m02582	-	-	3e-2	At5g05790	myb family transcription factor	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
49.5 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
40.4 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
15.3 98.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.3 98.4 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.1 98.4 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.9 98.4 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.7 98.4 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.5 98.3 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.4 98.3 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.1 98.3 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
49.5	99.9	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
40.4	99.9	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
15.3	98.7	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.3	98.4	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.1	98.4	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.9	98.4	GSM377080	Genomic DNA - 45 day old leaf sample - mutant g6728	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.7	98.4	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.5	98.3	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.4	98.3	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.1	98.3	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.029 1 GO:0006520 The chemical reactions and pathways involving amino acids, organic acids containing one or more amino substituents.

SF	Genes	GO ID	Process Name	Link to AmiGO
0.029	1	GO:0006520	The chemical reactions and pathways involving amino acids, organic acids containing one or more amino substituents.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

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Gene ID	Os01g0899800
Gene name
Homology with Arabidopsis	Similar to At1g51190: PLT2 (PLETHORA 2) (HF=6e-30)
Module size	25 genes
NF	0.39
%ile	47.3

Co-expression analysis

Gene ID Os01g0899800 Gene name Homology with ArabidopsisSimilar to At1g51190: PLT2 (PLETHORA 2) (HF=6e-30) Module size 25 genes NF 0.39 %ile 47.3

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO0.0291GO:0006520The chemical reactions and pathways involving amino acids, organic acids containing one or more amino substituents.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os01g0899800

Gene name
Homology with Arabidopsis Similar to At1g51190: PLT2 (PLETHORA 2) (HF=6e-30)

Module size 25 genes

NF 0.39

%ile 47.3

SF Genes GO ID Process Name Link to AmiGO
0.029 1 GO:0006520 The chemical reactions and pathways involving amino acids, organic acids containing one or more amino substituents.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays