CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0884300

Gene name
Homology with Arabidopsis Similar to At1g01720: ATAF1 (HF=7e-29)

Module size 12 genes

NF 0.39

%ile 47.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.51 68.7 0.87 Os01g0884300 AK068392.1 - No apical meristem (NAM) protein domain containingprotein 7e-29 At1g01720 ATAF1 O.I. H.G. S.X.
0.57 77.0 0.92 Os03g0402800 AK061842.1 - ZIM domain containing protein 2e+0 At1g19180 JAZ1 (JASMONATE-ZIM-DOMAIN PROTEIN 1) O.I. H.G. S.X.
0.53 71.3 0.90 Os05g0287800 AK071727.1 - Conserved hypothetical protein 7e-11 At2g37940 - O.I. H.G. S.X.
0.50 68.0 0.90 Os10g0392400 AK061602.1 - ZIM domain containing protein 5e-1 At5g56320 ATEXPA14 (ARABIDOPSIS THALIANA EXPANSIN A14) O.I. H.G. S.X.
0.46 60.9 0.91 Os07g0685700 AB074972.1 - Ethylene insensitive 3 family protein 2e-2 At1g56170 NF-YC2 (NUCLEAR FACTOR Y, SUBUNIT C2) O.I. H.G. S.X.
0.44 58.1 0.91 Os03g0761100 AK066083.1 - Protein phosphatase 2C-like protein 6e-8 At4g33920 protein phosphatase 2C family protein / PP2C family protein O.I. H.G. S.X.
0.40 51.1 0.92 Os01g0908700 AK120427.1 - Heterogeneous nuclear ribonucleoprotein A2 homolog1 (hnRNP A2(A)) 2e-17 At1g67800 copine-related O.I. H.G. S.X.
0.39 48.3 0.93 Os03g0187600 AK068057.1 - GRAM domain containing protein 6e-1 At1g28200 FIP1 (FH INTERACTING PROTEIN 1) O.I. H.G. S.X.
0.37 45.0 0.91 Os03g0241300 AK072703.1 - Hypothetical protein 1e+0 At3g49010 ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) O.I. H.G. S.X.
0.35 41.7 0.90 Os05g0343400 AK121190.1 - WRKY transcription factor 53 (Transcription factorWRKY12) 3e-7 At5g07100 WRKY26 O.I. H.G. S.X.
0.30 32.7 0.88 Os10g0574700 CB630449 - Protein of unknown function DUF597 family protein 4e-2 At4g17900 zinc-binding family protein O.I. H.G. S.X.
0.19 15.1 0.90 Os02g0324700 CR288909 - Conserved hypothetical protein 1e+0 At1g06980 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
32.8 99.8 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.1 98.4 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.0 98.4 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.4 98.3 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.6 98.2 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.4 98.2 GSM195218 stigma 1, biological rep1 GSE7951 Genome-wide gene expression profiling of rice stigma
11.3 98.2 GSM195220 stigma 3, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
11.2 98.2 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2 98.2 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
10.9 98.1 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.034 1 GO:0006470 The process of removing one or more phosphoric residues from a protein.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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