CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0883100

Gene name
Homology with Arabidopsis Similar to At5g20240: PI (PISTILLATA) (HF=1e-1)

Module size 7 genes

NF 0.36

%ile 41.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.86 96.4 0.81 Os01g0883100 AY551924.1 - PISTILLATA-like MADS box protein 1e-1 At5g20240 PI (PISTILLATA) O.I. H.G. S.X.
0.46 60.9 0.84 Os08g0531700 U78891.2 - Transcription factor, MADS-box domain containingprotein 6e-7 At2g03710 SEP4 (SEPALLATA 4) O.I. H.G. S.X.
0.38 46.9 0.80 Os09g0507200 U78892.1 - MADS box protein 1e-20 At3g02310 SEP2 (SEPALLATA 2) O.I. H.G. S.X.
0.38 46.9 0.84 Os03g0421000 AK073684.1 - FYVE/PHD zinc finger domain containing protein 9e-1 At2g02450 ANAC035 (Arabidopsis NAC domain containing protein 35) O.I. H.G. S.X.
0.35 41.7 0.83 Os06g0653000 AK070469.1 - Glossy1 homolog (Fragment) 7e-2 At5g57800 CER3 (ECERIFERUM 3) O.I. H.G. S.X.
0.23 21.2 0.81 Os05g0423400 AK100233.1 - PISTILLATA-like MADS box protein 4e-8 At3g57230 AGL16 (AGAMOUS-LIKE 16) O.I. H.G. S.X.
0.16 11.3 0.81 Os10g0471100 AF143746.1 - Sterol desaturase family protein 5e-9 At2g37700 catalytic/ iron ion binding / oxidoreductase O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
58.0 99.9 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
42.6 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
19.5 99.1 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
10.9 98.1 GSM429984 Rice wild-type panicle rep2 GSE17194 Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
10.5 98.1 GSM429982 Rice wild-type panicle rep1 GSE17194 Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
9.0 97.8 GSM275408 Bala root tip_At the wax layer_rep1 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
7.9 97.6 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.8 97.6 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.8 97.6 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.6 97.5 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.250 1 GO:0010025 The chemical reactions and pathways resulting in the formation of wax, which includes C16 and C18 fatty acids.
0.250 1 GO:0010143 The chemical reactions and pathways resulting in the formation of cutin, a waxy substance, which combined with cellulose forms a substance nearly impervious to water and constituting the cuticle in plants.
0.222 1 GO:0048653 The process whose specific outcome is the progression of the anther over time, from its formation to the mature structure.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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