CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0873000

Gene name
Homology with Arabidopsis Similar to At4g34970: ADF9 (ACTIN DEPOLYMERIZING FACTOR 9) (HF=2e+0)

Module size 6 genes

NF 0.02

%ile 1.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.96 Os01g0873000 NM_190814.1 - Homeodomain-like containing protein 2e+0 At4g34970 ADF9 (ACTIN DEPOLYMERIZING FACTOR 9) O.I. H.G. S.X.
0.03 1.4 0.98 Os06g0107200 AK108791.1 - Hypothetical protein 3e+0 At5g48020 unknown protein O.I. H.G. S.X.
0.02 1.0 0.98 Os04g0554900 9632.m04518 - - 8e-1 At2g32890 RALFL17 (RALF-LIKE 17) O.I. H.G. S.X.
0.01 0.5 0.98 Os02g0743300 9630.m04995 - - 3e+0 At1g66235 unknown protein O.I. H.G. S.X.
0.01 0.5 0.97 Os10g0540400 9638.m03569 - - 2e-1 At4g21720 unknown protein O.I. H.G. S.X.
0.01 0.5 0.97 Os05g0544000 9633.m04384 - - 2e+0 At2g05260 lipase class 3 family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
18.7 99.0 GSM195224 Suspension cell GSE7951 Genome-wide gene expression profiling of rice stigma
10.7 98.1 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
7.5 97.5 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.9 97.3 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.8 97.0 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.5 96.8 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
5.3 96.7 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.1 96.6 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.1 96.6 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.1 96.6 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the maize gene, ZmAffx.937.1.S1_at, orthologous to the query gene, Os01g0873000

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 94.0 ZmAffx.937.1.S1_at At4g34970 - - 8e+0 At4g19620 unknown protein O.I. H.G. S.X.
0.73 89.9 Zm.4250.1.A1_at At4g34970 autophagy-related 3 - 8e-13 At5g61500 ATG3 O.I. H.G. S.X.
0.67 85.8 ZmAffx.138.1.S1_at At4g34970 - - 3e+0 At1g66510 AAR2 protein family O.I. H.G. S.X.
0.65 82.1 ZmAffx.890.1.S1_at At4g34970 protein dimerization - 3e+0 At5g37240 unknown protein O.I. H.G. S.X.
0.64 81.7 ZmAffx.147.1.S1_at At4g34970 Hypothetical protein LOC100192026 - 3e+0 At2g20260 PSAE-2 (photosystem I subunit E-2) O.I. H.G. S.X.
0.61 79.5 Zm.8795.1.A1_a_at At4g34970 - - 5e+0 At5g66550 Maf family protein O.I. H.G. S.X.
0.60 77.8 Zm.15671.1.A1_at At4g34970 - - 4e-1 At5g20630 GER3 (GERMIN 3) O.I. H.G. S.X.
0.58 75.1 ZmAffx.830.1.S1_at At4g34970 - - 6e+0 At5g40930 TOM20-4 (TRANSLOCASE OF OUTER MEMBRANE 20-4) O.I. H.G. S.X.
0.57 75.1 Zm.10401.1.S1_at At4g34970 glyoxylate reductase - 3e-12 At1g79870 oxidoreductase family protein O.I. H.G. S.X.
0.55 71.6 Zm.18134.1.A1_at At4g34970 - - 2e-1 At2g18050 HIS1-3 (HISTONE H1-3) O.I. H.G. S.X.
0.50 65.7 ZmAffx.172.1.A1_at At4g34970 - - 3e+0 Atmg00240 - O.I. H.G. S.X.
0.47 59.9 ZmAffx.902.1.S1_at At4g34970 hypothetical protein LOC100191467 - 3e+0 At4g16640 matrix metalloproteinase, putative O.I. H.G. S.X.
0.46 58.4 ZmAffx.1360.1.S1_at At4g34970 - - 1e+0 At5g44650 unknown protein O.I. H.G. S.X.
0.46 58.4 Zm.386.1.S1_at At4g34970 tassel seed2 - 4e-2 At3g13850 LBD22 (LOB DOMAIN-CONTAINING PROTEIN 22) O.I. H.G. S.X.
0.34 37.2 Zm.3851.3.A1_a_at At4g34970 - - 5e+0 At1g20340 DRT112 O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage