Co-expression analysis

Gene ID Os01g0873000
Gene name
Homology with ArabidopsisSimilar to At4g34970: ADF9 (ACTIN DEPOLYMERIZING FACTOR 9) (HF=2e+0)
Module size 6 genes
NF 0.02
%ile 1.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.90.96Os01g0873000NM_190814.1-Homeodomain-like containing protein2e+0At4g34970ADF9 (ACTIN DEPOLYMERIZING FACTOR 9)O.I.H.G.S.X.
0.031.40.98Os06g0107200AK108791.1-Hypothetical protein3e+0At5g48020unknown proteinO.I.H.G.S.X.
0.021.00.98Os04g05549009632.m04518--8e-1At2g32890RALFL17 (RALF-LIKE 17)O.I.H.G.S.X.
0.010.50.98Os02g07433009630.m04995--3e+0At1g66235unknown proteinO.I.H.G.S.X.
0.010.50.97Os10g05404009638.m03569--2e-1At4g21720unknown proteinO.I.H.G.S.X.
0.010.50.97Os05g05440009633.m04384--2e+0At2g05260lipase class 3 family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
18.799.0GSM195224Suspension cellGSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
10.798.1GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
7.597.5GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
6.997.3GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
5.897.0GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
5.596.8GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
5.396.7GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
5.196.6GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
5.196.6GSM377072Genomic DNA - 45 day old leaf sample - mutant d1137GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
5.196.6GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

A co-expression module including the grape gene, 1620370_at, orthologous to the query gene, Os01g0873000

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9198.81620370_atAt4g34970--5e+0At1g02710glycine-rich proteinO.I.H.G.S.X.
0.1111.31611291_atAt4g34970hypothetical protein LOC100261243-3e-67At2g02760ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2)O.I.H.G.S.X.
0.099.41607758_atAt4g34970hypothetical protein LOC100267502-3e-20At1g75950SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1)O.I.H.G.S.X.
0.066.81618002_s_atAt4g34970hypothetical protein LOC100260795-3e-48At2g27030CAM5 (CALMODULIN 5)O.I.H.G.S.X.
0.034.21610373_atAt4g34970hypothetical protein LOC100242638-1e-20At2g26210ankyrin repeat family proteinO.I.H.G.S.X.
0.023.21608847_atAt4g34970similar to nuclear movement family protein-6e-49At5g58740nuclear movement family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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