CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0873000

Gene name
Homology with Arabidopsis Similar to At4g34970: ADF9 (ACTIN DEPOLYMERIZING FACTOR 9) (HF=2e+0)

Module size 6 genes

NF 0.02

%ile 1.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.96 Os01g0873000 NM_190814.1 - Homeodomain-like containing protein 2e+0 At4g34970 ADF9 (ACTIN DEPOLYMERIZING FACTOR 9) O.I. H.G. S.X.
0.03 1.4 0.98 Os06g0107200 AK108791.1 - Hypothetical protein 3e+0 At5g48020 unknown protein O.I. H.G. S.X.
0.02 1.0 0.98 Os04g0554900 9632.m04518 - - 8e-1 At2g32890 RALFL17 (RALF-LIKE 17) O.I. H.G. S.X.
0.01 0.5 0.98 Os02g0743300 9630.m04995 - - 3e+0 At1g66235 unknown protein O.I. H.G. S.X.
0.01 0.5 0.97 Os10g0540400 9638.m03569 - - 2e-1 At4g21720 unknown protein O.I. H.G. S.X.
0.01 0.5 0.97 Os05g0544000 9633.m04384 - - 2e+0 At2g05260 lipase class 3 family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
18.7 99.0 GSM195224 Suspension cell GSE7951 Genome-wide gene expression profiling of rice stigma
10.7 98.1 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
7.5 97.5 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.9 97.3 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.8 97.0 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.5 96.8 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
5.3 96.7 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.1 96.6 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.1 96.6 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.1 96.6 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.203226.1.S1_at, orthologous to the query gene, Os01g0873000

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.40 67.0 PtpAffx.203226.1.S1_at At4g34970 hypothetical protein - 4e-15 At3g09370 MYB3R-3 (myb domain protein 3R-3) O.I. H.G. S.X.
0.25 43.6 PtpAffx.213563.1.S1_at At4g34970 - - 3e-1 At1g77160 unknown protein O.I. H.G. S.X.
0.09 14.6 PtpAffx.214441.1.S1_at At4g34970 SET domain protein - 1e-23 At4g30860 SDG4 (SET DOMAIN GROUP 4) O.I. H.G. S.X.
0.04 6.9 PtpAffx.99685.1.S1_s_at At4g34970 hypothetical protein - 8e-81 At3g47520 MDH (MALATE DEHYDROGENASE) O.I. H.G. S.X.
0.04 6.9 PtpAffx.202765.1.S1_at At4g34970 hypothetical protein - 1e-128 Atmg00520 - O.I. H.G. S.X.
0.03 5.2 PtpAffx.212880.1.S1_at At4g34970 hypothetical protein - 6e-2 At5g37380 DNAJ heat shock N-terminal domain-containing protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage