CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0873000

Gene name
Homology with Arabidopsis Similar to At4g34970: ADF9 (ACTIN DEPOLYMERIZING FACTOR 9) (HF=2e+0)

Module size 6 genes

NF 0.02

%ile 1.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.96 Os01g0873000 NM_190814.1 - Homeodomain-like containing protein 2e+0 At4g34970 ADF9 (ACTIN DEPOLYMERIZING FACTOR 9) O.I. H.G. S.X.
0.03 1.4 0.98 Os06g0107200 AK108791.1 - Hypothetical protein 3e+0 At5g48020 unknown protein O.I. H.G. S.X.
0.02 1.0 0.98 Os04g0554900 9632.m04518 - - 8e-1 At2g32890 RALFL17 (RALF-LIKE 17) O.I. H.G. S.X.
0.01 0.5 0.98 Os02g0743300 9630.m04995 - - 3e+0 At1g66235 unknown protein O.I. H.G. S.X.
0.01 0.5 0.97 Os10g0540400 9638.m03569 - - 2e-1 At4g21720 unknown protein O.I. H.G. S.X.
0.01 0.5 0.97 Os05g0544000 9633.m04384 - - 2e+0 At2g05260 lipase class 3 family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
18.7 99.0 GSM195224 Suspension cell GSE7951 Genome-wide gene expression profiling of rice stigma
10.7 98.1 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
7.5 97.5 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.9 97.3 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.8 97.0 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.5 96.8 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
5.3 96.7 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.1 96.6 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.1 96.6 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.1 96.6 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At4g34970, orthologous to the query gene, Os01g0873000

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
1.00 100.0 At4g34970 829649 ADF9 (ACTIN DEPOLYMERIZING FACTOR 9) F:actin binding;P:biological_process unknown;C:intracellular;MPOF O.I. H.G. S.X.
0.94 96.7 At1g26680 839209 transcriptional factor B3 family protein F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:chloroplast;POBM O.I. H.G. S.X.
0.90 95.1 At1g04180 837024 flavin-containing monooxygenase family protein / FMO family protein F:NADP or NADPH binding, oxidoreductase activity, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity;P:unknown;C:unknown;BOFMPA O.I. H.G. S.X.
0.88 94.0 At1g04610 839474 flavin-containing monooxygenase / FMO (YUCCA3) F:oxidoreductase activity;P:auxin biosynthetic process;C:unknown;BOFMPA O.I. H.G. S.X.
0.85 92.4 At1g21340 838733 Dof-type zinc finger domain-containing protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:cellular_component unknown;PO O.I. H.G. S.X.
0.80 89.8 At4g28720 828993 flavin-containing monooxygenase family protein / FMO family protein F:oxidoreductase activity, monooxygenase activity;P:unknown;C:unknown;BOFMPA O.I. H.G. S.X.
0.79 89.1 At3g01840 820047 protein kinase family protein F:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, cell wall macromolecule catabolic process;C:endomembrane system;MPOFBVA O.I. H.G. S.X.
0.77 88.0 At5g57420 835848 IAA33 (INDOLE-3-ACETIC ACID INDUCIBLE 33) Belongs to auxin inducible gene family. O.I. H.G. S.X.
0.77 88.0 At2g04025 814929 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. H.G. S.X.
0.77 88.0 At4g18450 827576 ethylene-responsive factor, putative encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. O.I. H.G. S.X.
0.73 85.5 At3g55550 824720 lectin protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA O.I. H.G. S.X.
0.69 82.9 At2g46850 819298 ATP binding / protein kinase/ protein tyrosine kinase F:protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;PMOFBV O.I. H.G. S.X.
0.69 82.9 At2g21610 816699 pectinesterase family protein F:pectinesterase activity;P:N-terminal protein myristoylation, cell wall modification;C:cell wall, plant-type cell wall;PBFAMO O.I. H.G. S.X.
0.67 81.6 At5g51470 835221 auxin-responsive GH3 family protein F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;POBMF O.I. H.G. S.X.
0.64 78.9 At4g26880 828795 stigma-specific Stig1 family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPOFM O.I. H.G. S.X.
0.61 76.7 At1g65570 842868 polygalacturonase, putative / pectinase, putative F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMA O.I. H.G. S.X.
0.58 73.8 At1g07290 837240 nucleotide-sugar transmembrane transporter F:nucleotide-sugar transmembrane transporter activity;P:biological_process unknown;C:cellular_component unknown;MFPO O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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