CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0866200

Gene name
Homology with Arabidopsis Similar to At1g09200: histone H3 (HF=3e-47)

Module size 6 genes

NF 0.08

%ile 5.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 0.79 Os01g0866200 CA754851 - Histone H3 3e-47 At1g09200 histone H3 O.I. H.G. S.X.
0.55 73.7 0.79 Os04g0419600 CR282432 - Histone H3 5e-21 At1g09200 histone H3 O.I. H.G. S.X.
0.55 73.7 0.84 Os05g0462700 AK105816.1 - Histone H4 variant TH011 6e-24 At5g59690 histone H4 O.I. H.G. S.X.
0.40 51.1 0.75 Os11g0661900 AK064062.1 - Hypothetical protein 8e-1 At5g57640 - O.I. H.G. S.X.
0.06 3.0 0.87 Os03g0138500 AK102410.1 - Hypothetical protein 5e-2 At3g10040 transcription factor O.I. H.G. S.X.
0.01 0.5 0.78 Os01g0580200 AK103045.1 - Beta-galactosidase precursor (EC 3.2.1.23)(Lactase) (Acid beta- galactosidase)(Exo-(1-->4)-beta-D-galactanase) 1e-10 At3g52840 BGAL2 (beta-galactosidase 2) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.9 98.6 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.2 98.3 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.3 98.2 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.7 98.1 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
10.3 98.1 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.9 97.6 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.9 97.6 GSM377079 Genomic DNA - 45 day old leaf sample - mutant g6686 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.3 97.5 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.2 97.4 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.2 97.4 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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