Co-expression analysis

Gene ID Os01g0864700
Gene name
Homology with ArabidopsisSimilar to At3g44200: NEK6 ("NIMA (NEVER IN MITOSIS, GENE A)-RELATED 6") (HF=3e-51)
Module size 6 genes
NF 0.53
%ile 70.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6787.20.92Os01g0864700AU172991-Protein kinase domain containing protein3e-51At3g44200NEK6 ("NIMA (NEVER IN MITOSIS, GENE A)-RELATED 6")O.I.H.G.S.X.
0.6079.70.92Os12g0639600AK122084.1-Soluble quinoprotein glucose dehydrogenase domaincontaining protein2e-8At1g74790catalyticO.I.H.G.S.X.
0.4458.10.92Os04g0650900AK064480.1-Alpha-N-acetylglucosaminidase3e-14At5g13690alpha-N-acetylglucosaminidase family / NAGLU familyO.I.H.G.S.X.
0.4355.40.91Os01g0168800C99695-Alpha/beta hydrolase family protein2e-1At1g08770PRA1.E (PRENYLATED RAB ACCEPTOR 1.E)O.I.H.G.S.X.
0.3644.00.92Os04g0613700AK105086.1-The start codon is not identified.1e-3At2g35020UTP--glucose-1-phosphate uridylyltransferase family proteinO.I.H.G.S.X.
0.3644.00.92Os01g0584200NM_192517.1-Dilute domain containing protein2e-1At1g08730XICO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
33.499.8GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
5.096.6GSM375766gid1-3_ shoot_replicate 2GSE15046Transcriptome analysis of gibberellin-signaling mutants in riceLink to GEO
4.996.5GSM278845WuYun3-RSV infected, biological rep2GSE11025Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infectionLink to GEO
4.796.4GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
3.995.8GSM302921root_rep2GSE11966Expression data from rice embryo,endosperm,root,leaf and seedlingLink to GEO
3.795.6GSM375765gid1-3_ shoot_replicate 1GSE15046Transcriptome analysis of gibberellin-signaling mutants in riceLink to GEO
3.695.5GSM375649Taichung 65_shoot_replicate 3GSE15046Transcriptome analysis of gibberellin-signaling mutants in riceLink to GEO
3.595.3GSM375648Taichung 65_shoot_replicate 2GSE15046Transcriptome analysis of gibberellin-signaling mutants in riceLink to GEO
3.495.2GSM375647Taichung 65_shoot_replicate 1GSE15046Transcriptome analysis of gibberellin-signaling mutants in riceLink to GEO
3.495.2GSM375767gid1-3_ shoot_replicate 3GSE15046Transcriptome analysis of gibberellin-signaling mutants in riceLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0631GO:0006725The chemical reactions and pathways involving aromatic compounds, any organic compound characterized by one or more planar rings, each of which contains conjugated double bonds and delocalized pi electrons, as carried out by individual cells.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage