CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0855200

Gene name
Homology with Arabidopsis Similar to At5g56840: DNA-binding family protein (HF=8e-2)

Module size 11 genes

NF 0.42

%ile 51.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.72 89.8 0.87 Os01g0855200 AK066597.1 - TPR-like domain containing protein 8e-2 At5g56840 DNA-binding family protein O.I. H.G. S.X.
0.67 87.2 0.91 Os07g0142900 AK064848.1 - Aldo/keto reductase family protein 2e-16 At1g06690 aldo/keto reductase family protein O.I. H.G. S.X.
0.64 83.4 0.90 Os02g0704000 AK064824.1 - Zeaxanthin cleavage oxygenase 4e+0 At4g19170 NCED4 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 4) O.I. H.G. S.X.
0.50 68.0 0.91 Os01g0810300 U37936.1 - Calmodulin-like protein 4e-20 At3g43810 CAM7 (CALMODULIN 7) O.I. H.G. S.X.
0.47 62.3 0.90 Os07g0476900 AK066045.1 - Thioredoxin-related domain containing protein 1e-1 At1g76080 CDSP32 (CHLOROPLASTIC DROUGHT-INDUCED STRESS PROTEIN OF 32 KD) O.I. H.G. S.X.
0.38 46.9 0.92 Os11g0130200 AK059458.1 - Protein of unknown function DUF309 domaincontaining protein 8e-3 At2g28790 osmotin-like protein, putative O.I. H.G. S.X.
0.33 38.8 0.94 Os01g0279700 AK067683.1 - Major facilitator superfamily protein 2e-48 At4g00370 ANTR2 O.I. H.G. S.X.
0.29 31.1 0.91 Os04g0448900 AB050884.1 - Zeaxanthin epoxidase 9e-11 At5g67030 ABA1 (ABA DEFICIENT 1) O.I. H.G. S.X.
0.29 31.1 0.94 Os04g0423600 AK065331.1 - Nuclear protein SET domain containing protein 8e+0 At5g15948 CPuORF10 (Conserved peptide upstream open reading frame 10) O.I. H.G. S.X.
0.24 22.4 0.91 Os09g0541000 AK104786.1 - - 1e-5 At2g37170 PIP2B (PLASMA MEMBRANE INTRINSIC PROTEIN 2) O.I. H.G. S.X.
0.24 22.4 0.91 Os02g0726600 AK064213.1 - Conserved hypothetical protein 5e+0 At5g67060 HEC1 (HECATE 1) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
16.0 98.7 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
15.0 98.6 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.9 98.3 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.1 98.2 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1 98.0 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.7 98.0 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.2 97.9 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.0 97.8 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.8 97.8 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.8 97.8 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.167 1 GO:0016123 The chemical reactions and pathways resulting in the formation of xanthophylls, oxygen-containing carotenoids.
0.154 1 GO:0009688 The chemical reactions and pathways resulting in the formation of abscisic acid, 5-(1-hydroxy-2,6,6,trimethyl-4-oxocyclohex-2-en-1-y1)-3-methylpenta-2,4-dienoic acid.
0.143 1 GO:0009737 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abscisic acid stimulus.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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