CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0852200

Gene name
Homology with Arabidopsis Similar to At3g46980: transporter-related (HF=5e-9)

Module size 18 genes

NF 0.28

%ile 28.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.84 96.0 0.92 Os01g0852200 AK063954.1 - Major facilitator superfamily protein 5e-9 At3g46980 transporter-related O.I. H.G. S.X.
0.56 76.3 0.94 Os06g0142900 CB641902 - Conserved hypothetical protein 2e+0 At3g57310 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein O.I. H.G. S.X.
0.36 44.0 0.94 Os02g0566900 AK068953.1 - Conserved hypothetical protein 2e-6 At1g36980 unknown protein O.I. H.G. S.X.
0.36 44.0 0.96 Os06g0320100 AK067233.1 - - 7e-2 At4g28790 basic helix-loop-helix (bHLH) family protein O.I. H.G. S.X.
0.34 40.0 0.94 Os05g0533900 AK106477.1 - - 3e-3 At1g33360 ATP-dependent Clp protease ATP-binding subunit ClpX, putative O.I. H.G. S.X.
0.30 32.7 0.96 Os04g0531700 AK119481.1 - Glucose/ribitol dehydrogenase family protein 4e+0 At4g23430 short-chain dehydrogenase/reductase (SDR) family protein O.I. H.G. S.X.
0.28 31.1 0.95 Os01g0280000 AK103348.1 - Exonuclease domain containing protein 4e+0 At2g34700 pollen Ole e 1 allergen and extensin family protein O.I. H.G. S.X.
0.26 25.6 0.95 Os10g0495000 AK066573.1 - KH, type 1 domain containing protein 2e-2 At5g15270 KH domain-containing protein O.I. H.G. S.X.
0.26 25.6 0.96 Os07g0618600 AK121137.1 - Zn-finger, FYVE type domain containing protein 3e+0 At2g26210 ankyrin repeat family protein O.I. H.G. S.X.
0.25 24.1 0.97 Os07g0103200 AU166434 - Conserved hypothetical protein 8e-10 At4g27120 unknown protein O.I. H.G. S.X.
0.21 17.9 0.97 Os05g0508700 AK063235.1 - TRAF-like domain containing protein 6e-15 At5g43560 meprin and TRAF homology domain-containing protein / MATH domain-containing protein O.I. H.G. S.X.
0.21 17.9 0.95 Os03g0369800 AK064875.1 - Novel plant SNARE 13 (AtNPSN13) 2e-7 At1g48240 ATNPSN12 O.I. H.G. S.X.
0.21 17.9 0.96 Os01g0521500 AK100846.1 - Heat shock protein DnaJ family protein 3e-10 At1g65280 heat shock protein binding O.I. H.G. S.X.
0.20 16.5 0.94 Os04g0486400 AK103296.1 - RML1 protein 6e-8 At3g25990 DNA-binding protein GT-1-related O.I. H.G. S.X.
0.17 12.6 0.95 Os12g0163800 CB676811 - Amino acid-binding ACT domain containing protein 1e-3 At2g24360 serine/threonine/tyrosine kinase, putative O.I. H.G. S.X.
0.15 10.3 0.96 Os06g0711600 AK064384.1 - Conserved hypothetical protein 8e-10 At2g16860 GCIP-interacting family protein O.I. H.G. S.X.
0.14 9.3 0.95 Os03g0698500 AK121032.1 - Yippee-like protein 4 4e-1 At2g40110 yippee family protein O.I. H.G. S.X.
0.13 8.2 0.96 Os07g0490200 AK070976.1 - Ankyrin repeat-rich membrane-spanning protein 6e-3 At4g16150 calmodulin binding / transcription regulator O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.1 98.6 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.0 98.3 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2 98.2 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.6 98.1 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.5 98.1 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.3 98.1 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.0 98.0 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.9 98.0 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.9 98.0 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8 98.0 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.025 1 GO:0015031 The directed movement of proteins into, out of, within or between cells.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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