CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0848200

Gene name
Homology with Arabidopsis Similar to At5g60805: - (HF=4e+0)

Module size 18 genes

NF 0.28

%ile 28.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 0.93 Os01g0848200 CB633945 - Delta 1-pyrroline-5-carboxylate synthetase (P5CS)[Includes: Glutamate 5-kinase (EC 2.7.2.11)(Gamma-glutamyl kinase) (GK) 4e+0 At5g60805 - O.I. H.G. S.X.
0.55 73.7 0.96 Os01g0970900 AK101688.1 - TPR-like domain containing protein 5e+0 At5g25220 KNAT3 (KNOTTED1-LIKE HOMEOBOX GENE 3) O.I. H.G. S.X.
0.43 55.4 0.97 Os03g0746500 AK058367.1 - RNA helicase like protein 5e-6 At4g14790 ATSUV3 O.I. H.G. S.X.
0.36 44.0 0.96 Os08g0135300 AK059320.1 - Hypothetical protein 2e+0 At2g16960 importin beta-2 subunit family protein O.I. H.G. S.X.
0.34 40.0 0.96 Os05g0171300 AK103471.1 - Brittle-1 protein, chloroplast precursor 4e-6 At4g32400 SHS1 (SODIUM HYPERSENSITIVE 1) O.I. H.G. S.X.
0.33 38.8 0.97 Os05g0386000 AK121888.1 - Conserved hypothetical protein 1e-13 At5g25265 unknown protein O.I. H.G. S.X.
0.31 34.5 0.96 Os03g0801800 AK067130.1 - RNA-binding region RNP-1 (RNA recognition motif)domain containing protein 7e-6 At2g21440 RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.
0.28 31.1 0.97 Os11g0522000 9639.m02907 - XY4 protein (Fragment) 2e-1 At1g12850 phosphoglycerate/bisphosphoglycerate mutase family protein O.I. H.G. S.X.
0.26 25.6 0.95 Os03g0281800 AK067596.1 - Sulfated surface glycoprotein 185 precursor (SSG185) 1e+0 At5g56840 DNA-binding family protein O.I. H.G. S.X.
0.24 22.4 0.96 Os04g0670400 AK064003.1 - Ovarian tumour, otubain domain containing protein 4e-3 At5g67170 SEC-C motif-containing protein / OTU-like cysteine protease family protein O.I. H.G. S.X.
0.21 17.9 0.96 Os04g0464600 AK105634.1 - Zn-finger, C2H2 type domain containing protein 2e-1 At5g47220 ERF2 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2) O.I. H.G. S.X.
0.20 16.5 0.97 Os07g0641800 AK071367.1 - Conserved hypothetical protein 2e+0 At4g27380 unknown protein O.I. H.G. S.X.
0.20 16.5 0.96 Os10g0141600 AK063564.1 - Conserved hypothetical protein 3e+0 At4g01410 harpin-induced family protein / HIN1 family protein / harpin-responsive family protein O.I. H.G. S.X.
0.16 11.3 0.97 Os07g0184900 AK102995.1 - ATP-dependent DNA helicase, 70 kDa subunit familyprotein 8e-6 At1g16970 KU70 (ARABIDOPSIS THALIANA KU70 HOMOLOG) O.I. H.G. S.X.
0.16 11.3 0.97 Os06g0132600 AK061226.1 - Conserved hypothetical protein 4e-2 At4g17760 damaged DNA binding / exodeoxyribonuclease III O.I. H.G. S.X.
0.16 11.3 0.96 Os01g0226500 AK066242.1 - Conserved hypothetical protein 2e-1 At2g46200 unknown protein O.I. H.G. S.X.
0.14 9.3 0.96 Os02g0658400 AK120166.1 - Remorin, C-terminal region domain containingprotein 8e-1 At4g17670 senescence-associated protein-related O.I. H.G. S.X.
0.11 6.5 0.97 Os04g0113000 AK072963.1 - Cyclin-like F-box domain containing protein 3e+0 At1g52230 PSAH2 (PHOTOSYSTEM I SUBUNIT H2) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
33.5 99.8 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.7 98.5 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.4 98.3 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
8.1 97.7 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.5 97.5 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.9 97.3 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.5 97.2 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.5 97.2 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.4 97.2 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.3 97.2 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.105 1 GO:0006303 The repair of a double-strand break in DNA in which the two broken ends are rejoined with little or no sequence complementarity. Information at the DNA ends may be lost due to the modification of broken DNA ends.
0.100 1 GO:0006561 The chemical reactions and pathways resulting in the formation of proline (pyrrolidine-2-carboxylic acid), a chiral, cyclic, nonessential alpha-amino acid found in peptide linkage in proteins.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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