Co-expression analysis

Gene ID Os01g0848000
Gene name
Homology with ArabidopsisSimilar to At3g02860: zinc ion binding (HF=4e+0)
Module size 8 genes
NF 0.74
%ile 95.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5978.00.98Os01g0848000NM_190602.1--4e+0At3g02860zinc ion bindingO.I.H.G.S.X.
0.8094.60.98Os11g05600009639.m03201-Hv1LRR21e+0At1g45231-O.I.H.G.S.X.
0.8094.60.98Os04g05235009632.m04244--2e-1At5g41390-O.I.H.G.S.X.
0.8094.60.98Os08g01657009635.m00582--3e+0At3g09900ATRABE1E (ARABIDOPSIS RAB GTPASE HOMOLOG E1E)O.I.H.G.S.X.
0.8094.60.98Os08g05620009636.m04569--4e+0At5g24560AtPP2-B12 (Phloem protein 2-B12)O.I.H.G.S.X.
0.6787.20.98Os04g04250009632.m03337--5e+0At4g18205-O.I.H.G.S.X.
0.6787.20.98Os08g01883009636.m00841--1e+0At2g4051040S ribosomal protein S26 (RPS26A)O.I.H.G.S.X.
0.5371.30.98Os08g01995009636.m00954--3e+0At2g32788-O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
46.799.9GSM195227AntherGSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
19.299.0GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
18.999.0GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
16.998.8GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
16.598.8GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
16.498.8GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
15.598.7GSM377085Genomic DNA - 45 day old leaf sample - mutant f2045GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
15.598.7GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
15.098.6GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
14.898.6GSM377078Genomic DNA - 45 day old leaf sample - mutant g6603GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.1001GO:0009405The set of specific processes that generate the ability of an organism to cause disease in another.Link to AmiGO
0.0591GO:0015992The directed movement of protons (hydrogen ions) into, out of, within or between cells.Link to AmiGO
0.0121GO:0006915A form of programmed cell death that begins when a cell receives internal or external signals that trigger the activity of proteolytic caspases, proceeds through a series of characteristic stages typically including rounding-up of the cell, retraction of pseudopodes, reduction of cellular volume (pyknosis), chromatin condensation, nuclear fragmentation (karyorrhexis), and plasma membrane blebbing (but maintenance of its integrity until the final stages of the process), and ends with the death of the cell.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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