CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0841600

Gene name
Homology with Arabidopsis Similar to At3g55440: TPI (TRIOSEPHOSPHATE ISOMERASE) (HF=2e-7)

Module size 6 genes

NF 0.69

%ile 92.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.56 76.3 0.87 Os01g0841600 AK059805.1 - Triosephosphate isomerase, cytosolic (EC 5.3.1.1)(TIM) (Triose- phosphate isomerase) 2e-7 At3g55440 TPI (TRIOSEPHOSPHATE ISOMERASE) O.I. H.G. S.X.
0.83 95.8 0.87 Os11g0112000 CF327155 - Aie2 protein 3e-1 At5g61270 PIF7 (PHYTOCHROME-INTERACTING FACTOR7) O.I. H.G. S.X.
0.67 87.2 0.87 Os07g0673900 AK120859.1 - Hypoxia induced protein conserved region familyprotein 1e-13 At3g05550 hypoxia-responsive family protein O.I. H.G. S.X.
0.63 82.7 0.87 Os05g0524400 AK063963.1 - Phosphofructokinase family protein 5e-15 At4g26270 PFK3 (PHOSPHOFRUCTOKINASE 3) O.I. H.G. S.X.
0.63 82.7 0.87 Os03g0293500 AK119500.1 - Pyruvate decarboxylase isozyme 2 (EC 4.1.1.1)(PDC) (Fragment) 2e-24 At5g01320 pyruvate decarboxylase, putative O.I. H.G. S.X.
0.60 79.7 0.92 Os08g0345700 AK099939.1 - Pyrophosphate--fructose 6-phosphate1-phosphotransferase alpha subunit (EC 2.7.1.90) (PFP)(6-phosphofructokinase, pyrophosphate-dependent)(Pyrophosphate-dependent 6-phosphofructose-1-kinase)(PPi-PFK) 6e-6 At1g20950 pyrophosphate--fructose-6-phosphate 1-phosphotransferase-related / pyrophosphate-dependent 6-phosphofructose-1-kinase-related O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
27.6 99.6 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
5.4 96.8 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.4 96.8 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.7 96.4 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.5 96.3 GSM207560 Mudanjiang8 OsWRKY13 Overexpressing D11UM1-1 rep3 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
4.2 96.0 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
4.0 95.9 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
3.9 95.8 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
3.9 95.8 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
3.9 95.8 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.043 1 GO:0006096 The chemical reactions and pathways resulting in the breakdown of a monosaccharide (generally glucose) into pyruvate, with the concomitant production of a small amount of ATP. Pyruvate may be converted to ethanol, lactate, or other small molecules, or fed into the TCA cycle.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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