CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0840900

Gene name
Homology with Arabidopsis Similar to At1g71090: auxin efflux carrier family protein (HF=2e-1)

Module size 6 genes

NF 0.41

%ile 50.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.77 93.1 0.95 Os01g0840900 AK063699.1 - Hypothetical protein 2e-1 At1g71090 auxin efflux carrier family protein O.I. H.G. S.X.
0.60 79.7 0.95 Os08g0158800 AK107200.1 - Hypothetical protein 2e-1 At1g44191 - O.I. H.G. S.X.
0.40 51.1 0.96 Os08g0455700 9636.m03564 - Exo70 exocyst complex subunit family protein 1e-2 At5g50380 ATEXO70F1 (exocyst subunit EXO70 family protein F1) O.I. H.G. S.X.
0.35 41.7 0.96 Os02g0202800 AK102082.1 - FAR1 domain containing protein 8e-2 At4g35040 bZIP transcription factor family protein O.I. H.G. S.X.
0.25 24.1 0.96 Os03g0850300 9631.m06265 - Sterile alpha motif homology 2 domain containingprotein 4e-1 At1g05420 OFP12 (OVATE FAMILY PROTEIN 12) O.I. H.G. S.X.
0.17 12.6 0.96 Os02g0235000 9630.m01296 - ARP2/3 complex, 21 kDa p21-Arc subunit familyprotein 2e+0 At1g60430 ARPC3 (actin-related protein C3) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
21.6 99.2 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
14.6 98.6 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
14.1 98.5 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.3 98.4 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.2 98.4 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7 98.2 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.4 98.2 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.8 98.1 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.8 98.1 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.4 98.1 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.286 1 GO:0030833 Any process that modulates the frequency, rate or extent of the assembly of actin filaments by the addition of actin monomers to a filament.
0.080 1 GO:0006887 A process of secretion by a cell that results in the release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell. This is the process whereby most molecules are secreted from eukaryotic cells.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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