CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0835600

Gene name
Homology with Arabidopsis Similar to At1g64060: ATRBOH F (ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE PROTEIN F) (HF=2e-4)

Module size 6 genes

NF 0.43

%ile 53.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 68.0 0.97 Os01g0835600 AK064796.1 - HMG-I and HMG-Y, DNA-binding domain containingprotein 2e-4 At1g64060 ATRBOH F (ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE PROTEIN F) O.I. H.G. S.X.
0.67 87.2 0.97 Os08g0178100 AK101717.1 - Pep3/Vps18/deep orange domain containing protein 1e-10 At1g12470 Pep3/Vps18/deep orange family protein O.I. H.G. S.X.
0.43 55.4 0.97 Os01g0234800 AK063827.1 - Vesicle trafficking protein SEC22b (SEC22 vesicletrafficking protein- like 1) 2e-26 At1g11890 SEC22 O.I. H.G. S.X.
0.42 53.9 0.96 Os08g0374200 CR278593 - Conserved hypothetical protein 2e+0 At5g44130 FLA13 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 13 PRECURSOR) O.I. H.G. S.X.
0.38 46.9 0.97 Os11g0146700 AK065900.1 - Conserved hypothetical protein 4e-25 At2g26460 RED family protein O.I. H.G. S.X.
0.23 21.2 0.96 Os09g0307800 AK060843.1 - SET domain protein 110 2e-7 At3g59960 ASHH4 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH4) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.3 96.1 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
4.1 96.0 GSM159202 Inflorescence (P5, 15 - 22 cm), biological rep 2 GSE6893 Expression data for reproductive development in rice
4.0 95.9 GSM409430 9311_young panicle 2cm, biological rep1 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
3.6 95.5 GSM275411 Azucena root tip_Buckled at the wax layer_rep1 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
3.6 95.5 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
3.4 95.2 GSM159201 Inflorescence (P5, 15 - 22 cm), biological rep 1 GSE6893 Expression data for reproductive development in rice
3.1 94.8 GSM409431 9311_young panicle 2cm, biological rep2 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
3.0 94.6 GSM159203 Inflorescence (P5, 15 - 22 cm), biological rep 3 GSE6893 Expression data for reproductive development in rice
2.8 94.3 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
2.7 94.1 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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