CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0816600

Gene name
Homology with Arabidopsis Similar to At5g49780: ATP binding / kinase/ protein serine/threonine kinase (HF=3e-7)

Module size 6 genes

NF 0.64

%ile 86.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 94.6 0.91 Os01g0816600 NM_191078.1 - Protein kinase domain containing protein 3e-7 At5g49780 ATP binding / kinase/ protein serine/threonine kinase O.I. H.G. S.X.
0.91 98.9 0.90 Os07g0493800 9635.m03053 - Protein kinase domain containing protein 3e-4 At4g13190 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase O.I. H.G. S.X.
0.67 87.2 0.86 Os11g0668600 9639.m04140 - Hypothetical protein 2e+0 At5g65080 MAF5 (MADS AFFECTING FLOWERING 5) O.I. H.G. S.X.
0.50 68.0 0.90 Os11g0600500 9639.m03524 - Calcium-binding EF-hand domain containing protein 1e+0 At2g44340 VQ motif-containing protein O.I. H.G. S.X.
0.47 62.3 0.90 Os01g0810500 NM_191035.1 - Protein kinase domain containing protein 2e-5 At1g61860 protein kinase, putative O.I. H.G. S.X.
0.38 46.9 0.90 Os08g0224900 9636.m01261 - Conserved hypothetical protein 3e-4 At5g10160 beta-hydroxyacyl-ACP dehydratase, putative O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
57.6 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
33.2 99.8 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.1 98.4 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
9.2 97.9 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.1 97.4 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.0 97.4 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.4 97.2 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.8 97.0 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.6 96.9 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.4 96.8 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the grape gene, 1609428_at, orthologous to the query gene, Os01g0816600

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.73 90.8 1609428_at At5g49780 hypothetical protein LOC100257037 - 1e-14 At1g79620 leucine-rich repeat transmembrane protein kinase, putative O.I. H.G. S.X.
0.61 83.2 1614235_at At5g49780 - - 5e-10 At3g61150 HDG1 (HOMEODOMAIN GLABROUS 1) O.I. H.G. S.X.
0.57 79.8 1613787_at At5g49780 hypothetical protein LOC100250201 - 4e-4 At5g24105 AGP41 (ARABINOGALACTAN-PROTEIN 41) O.I. H.G. S.X.
0.53 75.2 1607831_at At5g49780 hypothetical protein LOC100249242 - 8e-7 At3g03950 protein binding O.I. H.G. S.X.
0.53 75.2 1606978_s_at At5g49780 hypothetical protein LOC100242245 - 5e-1 At1g16680 DNAJ heat shock N-terminal domain-containing protein / S-locus protein, putative O.I. H.G. S.X.
0.46 66.5 1620672_at At5g49780 hypothetical protein LOC100254089 - 4e-11 At3g54350 emb1967 (embryo defective 1967) O.I. H.G. S.X.
0.45 64.6 1617357_at At5g49780 hypothetical protein LOC100263238 - 3e-25 At5g57410 unknown protein O.I. H.G. S.X.
0.45 64.6 1613050_at At5g49780 hypothetical protein LOC100248215 - 5e-4 At1g20470 auxin-responsive family protein O.I. H.G. S.X.
0.45 64.6 1620990_at At5g49780 hypothetical protein LOC100247103 - 1e-18 At1g19330 unknown protein O.I. H.G. S.X.
0.42 60.1 1615779_at At5g49780 hypothetical protein LOC100263332 - 2e+1 At5g16567 unknown protein O.I. H.G. S.X.
0.41 58.7 1614963_at At5g49780 hypothetical protein LOC100266167 - 8e-12 At1g01950 armadillo/beta-catenin repeat family protein / kinesin motor family protein O.I. H.G. S.X.
0.40 57.7 1614917_at At5g49780 hypothetical protein LOC100267340 - 4e+0 At5g60660 PIP2 O.I. H.G. S.X.
0.39 54.9 1616512_at At5g49780 hypothetical LOC100244665 - 2e-8 At5g12350 Ran GTPase binding / chromatin binding / zinc ion binding O.I. H.G. S.X.
0.39 54.9 1610048_at At5g49780 hypothetical protein LOC100258703 - 3e-4 At5g37310 - O.I. H.G. S.X.
0.34 46.8 1621735_at At5g49780 hypothetical protein LOC100245551 - 1e+0 At5g06660 unknown protein O.I. H.G. S.X.
0.33 45.7 1608808_at At5g49780 hypothetical protein LOC100252460 - 1e+0 Atmg01020 - O.I. H.G. S.X.
0.33 45.7 1608070_at At5g49780 hypothetical protein LOC100245501 - 1e+0 At4g10880 unknown protein O.I. H.G. S.X.
0.32 43.1 1612058_at At5g49780 hypothetical protein LOC100259015 - 3e-15 At2g33845 DNA-binding protein-related O.I. H.G. S.X.
0.29 37.7 1611382_at At5g49780 hypothetical protein LOC100264955 - 2e-6 At3g53850 - O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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