CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0815700

Gene name
Homology with Arabidopsis Similar to At5g17790: VAR3 (VARIEGATED 3) (HF=5e-10)

Module size 8 genes

NF 0.57

%ile 77.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.71 89.6 0.93 Os01g0815700 AK073519.1 - Zn-finger, Ran-binding domain containing protein 5e-10 At5g17790 VAR3 (VARIEGATED 3) O.I. H.G. S.X.
0.71 89.6 0.94 Os07g0583200 AK071674.1 - Mitochodrial transcription terminationfactor-related family protein 4e-3 At5g55580 mitochondrial transcription termination factor family protein / mTERF family protein O.I. H.G. S.X.
0.63 82.7 0.94 Os05g0571100 AK068658.1 - Plant specific of unknown function DUF860 familyprotein 4e-3 At4g01037 ubiquitin thiolesterase O.I. H.G. S.X.
0.53 71.3 0.94 Os10g0198600 AK068249.1 - Intron-encoded nuclease 2 domain containingprotein 2e-2 At1g53800 endonuclease O.I. H.G. S.X.
0.52 69.6 0.94 Os03g0108600 AK065776.1 - DEAD/DEAH box helicase, N-terminal domaincontaining protein 2e-5 At3g06980 DEAD/DEAH box helicase, putative O.I. H.G. S.X.
0.50 68.0 0.94 Os01g0757700 CF312018 - TPR-like domain containing protein 2e-3 At4g21190 emb1417 (embryo defective 1417) O.I. H.G. S.X.
0.42 53.9 0.94 Os03g0219700 AK071610.1 - DEAD/DEAH box helicase, N-terminal domaincontaining protein 3e-4 At1g12770 EMB1586 (embryo defective 1586) O.I. H.G. S.X.
0.40 51.1 0.94 Os02g0602400 AK069111.1 - Mitochodrial transcription terminationfactor-related family protein 2e-1 At2g16980 tetracycline transporter O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.8 98.4 GSM195218 stigma 1, biological rep1 GSE7951 Genome-wide gene expression profiling of rice stigma
12.6 98.4 GSM195219 stigma 2, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
11.9 98.3 GSM195220 stigma 3, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
11.6 98.2 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
9.0 97.8 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.7 97.8 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.2 97.7 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
7.9 97.6 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.9 97.6 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.8 97.6 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.039 1 GO:0006418 The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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