CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0814100

Gene name
Homology with Arabidopsis Similar to At2g14170: ALDH6B2 (HF=5e-1)

Module size 6 genes

NF 0.65

%ile 87.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.92 Os01g0814100 AK061173.1 - Plant lipid transfer/seed storage/trypsin-alphaamylase inhibitor domain containing protein 5e-1 At2g14170 ALDH6B2 O.I. H.G. S.X.
0.73 91.1 0.90 Os07g0194300 AK062637.1 - Hypothetical protein 1e+0 At4g17500 ATERF-1 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1) O.I. H.G. S.X.
0.67 87.2 0.91 Os07g0565800 AK062834.1 - Conserved hypothetical protein 2e+0 At3g25577 unknown protein O.I. H.G. S.X.
0.67 87.2 0.92 Os01g0652000 NM_192389.1 - - 1e-3 At4g18570 proline-rich family protein O.I. H.G. S.X.
0.50 68.0 0.91 Os02g0816200 AK060243.1 - Lipolytic enzyme, G-D-S-L family protein 2e-4 At3g04290 LTL1 (LI-TOLERANT LIPASE 1) O.I. H.G. S.X.
0.25 24.1 0.92 Os06g0478600 AK064086.1 - Leucine-rich repeat, plant specific containingprotein 9e-1 At5g01380 transcription factor O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	98.9	0.92	Os01g0814100	AK061173.1	-	Plant lipid transfer/seed storage/trypsin-alphaamylase inhibitor domain containing protein	5e-1	At2g14170	ALDH6B2	O.I.	H.G.	S.X.
0.73	91.1	0.90	Os07g0194300	AK062637.1	-	Hypothetical protein	1e+0	At4g17500	ATERF-1 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1)	O.I.	H.G.	S.X.
0.67	87.2	0.91	Os07g0565800	AK062834.1	-	Conserved hypothetical protein	2e+0	At3g25577	unknown protein	O.I.	H.G.	S.X.
0.67	87.2	0.92	Os01g0652000	NM_192389.1	-	-	1e-3	At4g18570	proline-rich family protein	O.I.	H.G.	S.X.
0.50	68.0	0.91	Os02g0816200	AK060243.1	-	Lipolytic enzyme, G-D-S-L family protein	2e-4	At3g04290	LTL1 (LI-TOLERANT LIPASE 1)	O.I.	H.G.	S.X.
0.25	24.1	0.92	Os06g0478600	AK064086.1	-	Leucine-rich repeat, plant specific containingprotein	9e-1	At5g01380	transcription factor	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.73	91.1	0.88	Os05g0398800	AK106842.1	-	Protein kinase domain containing protein	1e+0	At5g45770	AtRLP55 (Receptor Like Protein 55)	O.I.	H.G.	S.X.
0.67	87.2	0.89	Os01g0753800	AK121555.1	-	Conserved hypothetical protein	3e+0	At5g47640	NF-YB2 (NUCLEAR FACTOR Y, SUBUNIT B2)	O.I.	H.G.	S.X.
0.61	81.2	0.90	Os10g0551700	AK107851.1	-	Plant lipid transfer/seed storage/trypsin-alphaamylase inhibitor domain containing protein	7e-3	At2g35960	NHL12	O.I.	H.G.	S.X.
0.56	76.3	0.86	Os09g0414500	AK058840.1	-	ZF-HD homeobox protein	5e-3	At3g28917	MIF2 (MINI ZINC FINGER 2)	O.I.	H.G.	S.X.
0.55	73.7	0.87	Os04g0554800	9632.m04516	-	Plant lipid transfer/seed storage/trypsin-alphaamylase inhibitor domain containing protein	1e-1	At4g12550	AIR1	O.I.	H.G.	S.X.
0.55	73.7	0.91	Os11g0456000	AK121173.1	-	Rapid ALkalinization Factor family protein	5e-3	At1g58420	-	O.I.	H.G.	S.X.
0.53	71.3	0.87	Os05g0441400	AK108756.1	-	Uncharacterized plant-specific domain containingprotein	2e+0	At2g31035	-	O.I.	H.G.	S.X.
0.50	68.0	0.84	Os01g0663300	AK071667.1	-	(1-4)-beta-mannan endohydrolase-like protein	8e-1	At5g66460	(1-4)-beta-mannan endohydrolase, putative	O.I.	H.G.	S.X.
0.50	68.0	0.87	Os04g0465600	AK119676.1	-	Bet v I allergen family protein	2e+0	At3g49305	-	O.I.	H.G.	S.X.
0.50	68.0	0.88	Os05g0518300	AK061147.1	-	Lipolytic enzyme, G-D-S-L family protein	8e-4	At1g71691	GDSL-motif lipase/hydrolase family protein	O.I.	H.G.	S.X.
0.43	55.4	0.89	Os09g0463300	AK060628.1	-	Protein of unknown function DUF547 domaincontaining protein	3e-7	At4g37080	unknown protein	O.I.	H.G.	S.X.
0.40	51.1	0.84	Os02g0617400	AK108108.1	-	Lipolytic enzyme, G-D-S-L family protein	1e-2	At3g04290	LTL1 (LI-TOLERANT LIPASE 1)	O.I.	H.G.	S.X.
0.40	51.1	0.87	Os11g0210100	AU096632	-	Peroxidase 43 precursor (EC 1.11.1.7) (AtperoxP43)	2e+0	At1g66690	S-adenosyl-L-methionine:carboxyl methyltransferase family protein	O.I.	H.G.	S.X.
0.40	51.1	0.87	Os10g0150300	BI805240	-	Protein of unknown function DUF1210 family protein	2e+0	At5g17840	chaperone protein dnaJ-related	O.I.	H.G.	S.X.
0.40	51.1	0.88	Os11g0115100	AK119692.1	-	Lipid transfer protein	2e+0	At4g15460	glycine-rich protein	O.I.	H.G.	S.X.
0.40	51.1	0.89	Os01g0140100	AK068990.1	-	Peptidase A1, pepsin family protein	6e-5	At3g18490	aspartyl protease family protein	O.I.	H.G.	S.X.
0.40	51.1	0.90	Os01g0251400	AU082531	-	Hypothetical protein	1e-1	At1g08970	NF-YC9 (NUCLEAR FACTOR Y, SUBUNIT C9)	O.I.	H.G.	S.X.
0.38	46.9	0.81	Os10g0148100	AK099480.1	-	Protein of unknown function DUF1210 family protein	9e-3	At5g67640	unknown protein	O.I.	H.G.	S.X.
0.38	46.9	0.88	Os11g0150400	AK058243.1	-	Conserved hypothetical protein	4e-1	At5g55570	unknown protein	O.I.	H.G.	S.X.
0.36	44.0	0.86	Os06g0711900	AK105838.1	-	Plant lipid transfer/seed storage/trypsin-alphaamylase inhibitor domain containing protein	5e-2	At2g43570	chitinase, putative	O.I.	H.G.	S.X.
0.36	44.0	0.86	Os10g0159700	BI804873	-	Heat shock protein Hsp20 domain containing protein	1e+0	At5g23660	MTN3 (Arabidopsis homolog of Medicago truncatula MTN3)	O.I.	H.G.	S.X.
0.36	44.0	0.89	Os03g0186900	AK062232.1	-	Peptidase A1, pepsin family protein	9e-7	At1g09750	chloroplast nucleoid DNA-binding protein-related	O.I.	H.G.	S.X.
0.36	44.0	0.85	Os01g0868900	AK099470.1	-	Proteinase inhibitor I9, subtilisin propeptidedomain containing protein	8e-2	At5g67360	ARA12	O.I.	H.G.	S.X.
0.29	31.1	0.86	Os06g0604000	AK061163.1	-	Ethylene response factor 3	2e-10	At1g15360	SHN1 (SHINE 1)	O.I.	H.G.	S.X.
0.29	31.1	0.91	Os03g0239000	AK061284.1	-	Glycoside hydrolase, family 16 domain containingprotein	2e-4	At1g32170	XTR4 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 4)	O.I.	H.G.	S.X.
0.28	31.1	0.89	Os02g0256100	AK059595.1	-	Glycoside hydrolase, family 28 protein	1e-24	At4g23820	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	O.I.	H.G.	S.X.
0.27	27.5	0.86	Os05g0454200	AK101945.1	-	Protein of unknown function DUF315 domaincontaining protein	1e-15	At4g38430	ROPGEF1	O.I.	H.G.	S.X.
0.26	25.6	0.88	Os03g0134900	AK102889.1	-	Glutathione S-transferase GSTF14 (Fragment)	3e+0	At3g62030	peptidyl-prolyl cis-trans isomerase, chloroplast / cyclophilin / rotamase / cyclosporin A-binding protein (ROC4)	O.I.	H.G.	S.X.
0.26	25.6	0.80	Os02g0308400	AK104655.1	-	Beta-Ig-H3/fasciclin domain containing protein	5e-1	At4g19200	proline-rich family protein	O.I.	H.G.	S.X.
0.25	24.1	0.85	Os10g0150700	AK067147.1	-	Protein of unknown function DUF1210 family protein	2e+0	At5g46060	unknown protein	O.I.	H.G.	S.X.
0.25	24.1	0.88	Os01g0952000	AK099691.1	-	Rhicadhesin receptor precursor (Germin-likeprotein)	2e-3	At3g62020	GLP10 (GERMIN-LIKE PROTEIN 10)	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
18.1 98.9 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.7 98.8 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.8 98.7 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.2 98.7 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.0 98.6 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.1 98.5 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.0 98.5 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.7 98.5 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.4 98.5 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.8 98.3 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
18.1	98.9	GSM377085	Genomic DNA - 45 day old leaf sample - mutant f2045	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.7	98.8	GSM377080	Genomic DNA - 45 day old leaf sample - mutant g6728	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.8	98.7	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.2	98.7	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.0	98.6	GSM377078	Genomic DNA - 45 day old leaf sample - mutant g6603	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.1	98.5	GSM377082	Genomic DNA - 45 day old leaf sample - mutant g9799	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.0	98.5	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.7	98.5	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.4	98.5	GSM377074	Genomic DNA - 45 day old leaf sample - mutant g282	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.8	98.3	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	Os01g0814100
Gene name
Homology with Arabidopsis	Similar to At2g14170: ALDH6B2 (HF=5e-1)
Module size	6 genes
NF	0.65
%ile	87.4

Co-expression analysis

Gene ID Os01g0814100 Gene name Homology with ArabidopsisSimilar to At2g14170: ALDH6B2 (HF=5e-1) Module size 6 genes NF 0.65 %ile 87.4

Co-expressed genes

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os01g0814100

Gene name
Homology with Arabidopsis Similar to At2g14170: ALDH6B2 (HF=5e-1)

Module size 6 genes

NF 0.65

%ile 87.4

SF Genes GO ID Process Name Link to AmiGO

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays