CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0814100

Gene name
Homology with Arabidopsis Similar to At2g14170: ALDH6B2 (HF=5e-1)

Module size 6 genes

NF 0.65

%ile 87.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.92 Os01g0814100 AK061173.1 - Plant lipid transfer/seed storage/trypsin-alphaamylase inhibitor domain containing protein 5e-1 At2g14170 ALDH6B2 O.I. H.G. S.X.
0.73 91.1 0.90 Os07g0194300 AK062637.1 - Hypothetical protein 1e+0 At4g17500 ATERF-1 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1) O.I. H.G. S.X.
0.67 87.2 0.91 Os07g0565800 AK062834.1 - Conserved hypothetical protein 2e+0 At3g25577 unknown protein O.I. H.G. S.X.
0.67 87.2 0.92 Os01g0652000 NM_192389.1 - - 1e-3 At4g18570 proline-rich family protein O.I. H.G. S.X.
0.50 68.0 0.91 Os02g0816200 AK060243.1 - Lipolytic enzyme, G-D-S-L family protein 2e-4 At3g04290 LTL1 (LI-TOLERANT LIPASE 1) O.I. H.G. S.X.
0.25 24.1 0.92 Os06g0478600 AK064086.1 - Leucine-rich repeat, plant specific containingprotein 9e-1 At5g01380 transcription factor O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
18.1 98.9 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.7 98.8 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.8 98.7 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.2 98.7 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.0 98.6 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.1 98.5 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.0 98.5 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.7 98.5 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.4 98.5 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.8 98.3 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the grape gene, 1617440_at, orthologous to the query gene, Os01g0814100

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.59 80.6 1617440_at At2g14170 hypothetical protein LOC100247017 - 8e-2 At5g61470 zinc finger (C2H2 type) family protein O.I. H.G. S.X.
0.91 98.8 1610683_at At2g14170 hypothetical protein LOC100264093 - 2e-6 At5g67260 CYCD3 O.I. H.G. S.X.
0.67 87.9 1620766_at At2g14170 hypothetical protein LOC100249220 - 9e-18 At1g23000 heavy-metal-associated domain-containing protein O.I. H.G. S.X.
0.67 87.9 1606471_at At2g14170 hypothetical protein LOC100244589 - 3e-6 At5g07030 aspartic-type endopeptidase O.I. H.G. S.X.
0.60 81.9 1611378_at At2g14170 hypothetical protein LOC100244478 - 2e-8 At1g60630 leucine-rich repeat family protein O.I. H.G. S.X.
0.55 77.3 1618871_at At2g14170 hypothetical protein LOC100265907 - 3e-7 At4g38660 thaumatin, putative O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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