CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0814100

Gene name
Homology with Arabidopsis Similar to At2g14170: ALDH6B2 (HF=5e-1)

Module size 6 genes

NF 0.65

%ile 87.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.92 Os01g0814100 AK061173.1 - Plant lipid transfer/seed storage/trypsin-alphaamylase inhibitor domain containing protein 5e-1 At2g14170 ALDH6B2 O.I. H.G. S.X.
0.73 91.1 0.90 Os07g0194300 AK062637.1 - Hypothetical protein 1e+0 At4g17500 ATERF-1 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1) O.I. H.G. S.X.
0.67 87.2 0.91 Os07g0565800 AK062834.1 - Conserved hypothetical protein 2e+0 At3g25577 unknown protein O.I. H.G. S.X.
0.67 87.2 0.92 Os01g0652000 NM_192389.1 - - 1e-3 At4g18570 proline-rich family protein O.I. H.G. S.X.
0.50 68.0 0.91 Os02g0816200 AK060243.1 - Lipolytic enzyme, G-D-S-L family protein 2e-4 At3g04290 LTL1 (LI-TOLERANT LIPASE 1) O.I. H.G. S.X.
0.25 24.1 0.92 Os06g0478600 AK064086.1 - Leucine-rich repeat, plant specific containingprotein 9e-1 At5g01380 transcription factor O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	98.9	0.92	Os01g0814100	AK061173.1	-	Plant lipid transfer/seed storage/trypsin-alphaamylase inhibitor domain containing protein	5e-1	At2g14170	ALDH6B2	O.I.	H.G.	S.X.
0.73	91.1	0.90	Os07g0194300	AK062637.1	-	Hypothetical protein	1e+0	At4g17500	ATERF-1 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1)	O.I.	H.G.	S.X.
0.67	87.2	0.91	Os07g0565800	AK062834.1	-	Conserved hypothetical protein	2e+0	At3g25577	unknown protein	O.I.	H.G.	S.X.
0.67	87.2	0.92	Os01g0652000	NM_192389.1	-	-	1e-3	At4g18570	proline-rich family protein	O.I.	H.G.	S.X.
0.50	68.0	0.91	Os02g0816200	AK060243.1	-	Lipolytic enzyme, G-D-S-L family protein	2e-4	At3g04290	LTL1 (LI-TOLERANT LIPASE 1)	O.I.	H.G.	S.X.
0.25	24.1	0.92	Os06g0478600	AK064086.1	-	Leucine-rich repeat, plant specific containingprotein	9e-1	At5g01380	transcription factor	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
18.1 98.9 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.7 98.8 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.8 98.7 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.2 98.7 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.0 98.6 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.1 98.5 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.0 98.5 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.7 98.5 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.4 98.5 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.8 98.3 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
18.1	98.9	GSM377085	Genomic DNA - 45 day old leaf sample - mutant f2045	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.7	98.8	GSM377080	Genomic DNA - 45 day old leaf sample - mutant g6728	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.8	98.7	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.2	98.7	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.0	98.6	GSM377078	Genomic DNA - 45 day old leaf sample - mutant g6603	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.1	98.5	GSM377082	Genomic DNA - 45 day old leaf sample - mutant g9799	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.0	98.5	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.7	98.5	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.4	98.5	GSM377074	Genomic DNA - 45 day old leaf sample - mutant g282	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.8	98.3	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the barley gene, Contig10481_at, orthologous to the query gene, Os01g0814100

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.76 89.8 Contig10481_at At2g14170 - - 7e+0 At5g17262 unknown protein O.I. H.G. S.X.
0.46 61.0 Contig16389_at At2g14170 - - 4e-9 At3g20440 alpha-amylase/ catalytic/ cation binding O.I. H.G. S.X.
0.44 58.9 Contig8749_at At2g14170 - - 3e+0 At4g29730 NFC5 (Nucleosome/chromatin assembly factor group C 5) O.I. H.G. S.X.
0.43 56.4 HG01J06u_at At2g14170 - - 5e+0 At4g24600 unknown protein O.I. H.G. S.X.
0.42 55.2 Contig22909_at At2g14170 - - 3e-2 At1g20550 unknown protein O.I. H.G. S.X.
0.42 55.2 Contig2748_at At2g14170 - - 1e-2 At4g20130 PTAC14 (PLASTID TRANSCRIPTIONALLY ACTIVE14) O.I. H.G. S.X.
0.41 53.9 rbags16i08_s_at At2g14170 - - 8e-1 At4g21330 DYT1 (DYSFUNCTIONAL TAPETUM 1) O.I. H.G. S.X.
0.41 53.9 Contig2750_s_at At2g14170 - - 4e-15 At2g33150 PKT3 (PEROXISOMAL 3-KETOACYL-COA THIOLASE 3) O.I. H.G. S.X.
0.41 53.9 Contig20065_at At2g14170 - - 4e-1 At4g11600 ATGPX6 (GLUTATHIONE PEROXIDASE 6) O.I. H.G. S.X.
0.41 53.9 Contig23202_at At2g14170 - - 3e-5 At5g09320 VPS9B O.I. H.G. S.X.
0.40 53.1 HV05M01u_at At2g14170 - - 8e+0 At5g41700 UBC8 (UBIQUITIN CONJUGATING ENZYME 8) O.I. H.G. S.X.
0.39 50.5 Contig7635_s_at At2g14170 - - 3e-1 At5g42630 ATS (ABERRANT TESTA SHAPE) O.I. H.G. S.X.
0.37 47.9 Contig9479_s_at At2g14170 - - 2e+0 At5g58470 TAF15b (TBP-ASSOCIATED FACTOR 15b) O.I. H.G. S.X.
0.35 45.1 Contig2749_at At2g14170 - - 1e+0 At1g03055 unknown protein O.I. H.G. S.X.
0.33 42.6 Contig49_x_at At2g14170 - - 4e+0 At3g05920 heavy-metal-associated domain-containing protein O.I. H.G. S.X.
0.32 40.3 HO11K23S_s_at At2g14170 - - 4e+0 At3g17420 GPK1 O.I. H.G. S.X.
0.31 38.6 HV05L09r_s_at At2g14170 - - 1e-3 At2g45200 GOS12 (GOLGI SNARE 12) O.I. H.G. S.X.
0.30 37.0 Contig10728_at At2g14170 - - 4e+0 At5g04520 unknown protein O.I. H.G. S.X.
0.29 35.5 HVSMEg0015A14r2_at At2g14170 - - 1e+0 At5g03905 hesB-like domain-containing protein O.I. H.G. S.X.
0.28 35.5 Contig6587_s_at At2g14170 - - 1e-4 At3g52470 harpin-induced family protein / HIN1 family protein / harpin-responsive family protein O.I. H.G. S.X.
0.28 35.5 Contig6378_s_at At2g14170 - - 1e-6 At5g46250 RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.
0.26 30.4 Contig3565_s_at At2g14170 - - 2e-1 At4g01430 nodulin MtN21 family protein O.I. H.G. S.X.
0.22 24.2 Contig6960_at At2g14170 - - 1e+0 At4g29770 - O.I. H.G. S.X.
0.21 22.6 Contig17945_at At2g14170 - - 3e-1 At3g49770 unknown protein O.I. H.G. S.X.
0.20 21.1 Contig18440_at At2g14170 - - 2e+0 At3g56590 hydroxyproline-rich glycoprotein family protein O.I. H.G. S.X.
0.19 19.6 HVSMEf0021D24f_at At2g14170 - - 2e+0 At2g37020 DNA binding / sequence-specific DNA binding O.I. H.G. S.X.
0.15 14.1 Contig13212_at At2g14170 - - 5e-5 At4g00830 RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.76	89.8	Contig10481_at	At2g14170	-	-	7e+0	At5g17262	unknown protein	O.I.	H.G.	S.X.
0.46	61.0	Contig16389_at	At2g14170	-	-	4e-9	At3g20440	alpha-amylase/ catalytic/ cation binding	O.I.	H.G.	S.X.
0.44	58.9	Contig8749_at	At2g14170	-	-	3e+0	At4g29730	NFC5 (Nucleosome/chromatin assembly factor group C 5)	O.I.	H.G.	S.X.
0.43	56.4	HG01J06u_at	At2g14170	-	-	5e+0	At4g24600	unknown protein	O.I.	H.G.	S.X.
0.42	55.2	Contig22909_at	At2g14170	-	-	3e-2	At1g20550	unknown protein	O.I.	H.G.	S.X.
0.42	55.2	Contig2748_at	At2g14170	-	-	1e-2	At4g20130	PTAC14 (PLASTID TRANSCRIPTIONALLY ACTIVE14)	O.I.	H.G.	S.X.
0.41	53.9	rbags16i08_s_at	At2g14170	-	-	8e-1	At4g21330	DYT1 (DYSFUNCTIONAL TAPETUM 1)	O.I.	H.G.	S.X.
0.41	53.9	Contig2750_s_at	At2g14170	-	-	4e-15	At2g33150	PKT3 (PEROXISOMAL 3-KETOACYL-COA THIOLASE 3)	O.I.	H.G.	S.X.
0.41	53.9	Contig20065_at	At2g14170	-	-	4e-1	At4g11600	ATGPX6 (GLUTATHIONE PEROXIDASE 6)	O.I.	H.G.	S.X.
0.41	53.9	Contig23202_at	At2g14170	-	-	3e-5	At5g09320	VPS9B	O.I.	H.G.	S.X.
0.40	53.1	HV05M01u_at	At2g14170	-	-	8e+0	At5g41700	UBC8 (UBIQUITIN CONJUGATING ENZYME 8)	O.I.	H.G.	S.X.
0.39	50.5	Contig7635_s_at	At2g14170	-	-	3e-1	At5g42630	ATS (ABERRANT TESTA SHAPE)	O.I.	H.G.	S.X.
0.37	47.9	Contig9479_s_at	At2g14170	-	-	2e+0	At5g58470	TAF15b (TBP-ASSOCIATED FACTOR 15b)	O.I.	H.G.	S.X.
0.35	45.1	Contig2749_at	At2g14170	-	-	1e+0	At1g03055	unknown protein	O.I.	H.G.	S.X.
0.33	42.6	Contig49_x_at	At2g14170	-	-	4e+0	At3g05920	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.
0.32	40.3	HO11K23S_s_at	At2g14170	-	-	4e+0	At3g17420	GPK1	O.I.	H.G.	S.X.
0.31	38.6	HV05L09r_s_at	At2g14170	-	-	1e-3	At2g45200	GOS12 (GOLGI SNARE 12)	O.I.	H.G.	S.X.
0.30	37.0	Contig10728_at	At2g14170	-	-	4e+0	At5g04520	unknown protein	O.I.	H.G.	S.X.
0.29	35.5	HVSMEg0015A14r2_at	At2g14170	-	-	1e+0	At5g03905	hesB-like domain-containing protein	O.I.	H.G.	S.X.
0.28	35.5	Contig6587_s_at	At2g14170	-	-	1e-4	At3g52470	harpin-induced family protein / HIN1 family protein / harpin-responsive family protein	O.I.	H.G.	S.X.
0.28	35.5	Contig6378_s_at	At2g14170	-	-	1e-6	At5g46250	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.
0.26	30.4	Contig3565_s_at	At2g14170	-	-	2e-1	At4g01430	nodulin MtN21 family protein	O.I.	H.G.	S.X.
0.22	24.2	Contig6960_at	At2g14170	-	-	1e+0	At4g29770	-	O.I.	H.G.	S.X.
0.21	22.6	Contig17945_at	At2g14170	-	-	3e-1	At3g49770	unknown protein	O.I.	H.G.	S.X.
0.20	21.1	Contig18440_at	At2g14170	-	-	2e+0	At3g56590	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.
0.19	19.6	HVSMEf0021D24f_at	At2g14170	-	-	2e+0	At2g37020	DNA binding / sequence-specific DNA binding	O.I.	H.G.	S.X.
0.15	14.1	Contig13212_at	At2g14170	-	-	5e-5	At4g00830	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	Os01g0814100
Gene name
Homology with Arabidopsis	Similar to At2g14170: ALDH6B2 (HF=5e-1)
Module size	6 genes
NF	0.65
%ile	87.4

Co-expression analysis

Gene ID Os01g0814100 Gene name Homology with ArabidopsisSimilar to At2g14170: ALDH6B2 (HF=5e-1) Module size 6 genes NF 0.65 %ile 87.4

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os01g0814100

Gene name
Homology with Arabidopsis Similar to At2g14170: ALDH6B2 (HF=5e-1)

Module size 6 genes

NF 0.65

%ile 87.4

SF Genes GO ID Process Name Link to AmiGO

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays