CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0813400

Gene name
Homology with Arabidopsis Similar to At2g47170: ARF1A1C (HF=2e-96)

Module size 7 genes

NF 0.63

%ile 85.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.73 91.1 0.98 Os01g0813400 AK065370.1 - ADP-ribosylation factor 2e-96 At2g47170 ARF1A1C O.I. H.G. S.X.
0.75 91.9 0.97 Os05g0409300 AK065214.1 - Cysteine protease inhibitor cystatin (Fragment) 2e+0 At2g20260 PSAE-2 (photosystem I subunit E-2) O.I. H.G. S.X.
0.63 82.7 0.97 Os07g0114300 AK062043.1 - Conserved hypothetical protein 3e-1 At2g23090 unknown protein O.I. H.G. S.X.
0.61 81.2 0.97 Os02g0820700 AK061365.1 - Bet1-like SNARE 1-1 (AtBET11) (Bet1/Sft1-likeSNARE 14a) (AtBS14a) 3e-18 At3g58170 BS14A (BET1P/SFT1P-LIKE PROTEIN 14A) O.I. H.G. S.X.
0.60 79.7 0.98 Os08g0366100 AK120339.1 - EDF-1 protein (HMBF1alpha) (Endothelialdifferentiation-related factor 1, isoform alpha)(Fragment) 6e-11 At2g42680 MBF1A (MULTIPROTEIN BRIDGING FACTOR 1A) O.I. H.G. S.X.
0.56 76.3 0.98 Os11g0425600 AK121882.1 - Four F5 protein family protein 5e+0 At5g42040 RPN12b (Regulatory Particle Non-ATPase 12b) O.I. H.G. S.X.
0.42 53.9 0.97 Os02g0792900 AK068367.1 - TMS membrane protein/tumour differentiallyexpressed protein family protein 1e-15 At1g16180 TMS membrane family protein / tumour differentially expressed (TDE) family protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.3 98.4 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.4 98.2 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
8.7 97.8 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.6 97.5 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.3 97.5 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.1 97.4 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.7 97.3 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.5 97.2 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.3 97.2 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.1 97.1 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.020 1 GO:0006886 The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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