Co-expression analysis

Gene ID Os01g0811300
Gene name
Homology with ArabidopsisSimilar to At1g73100: SUVH3 (SU(VAR)3-9 HOMOLOG 3) (HF=2e+0)
Module size 14 genes
NF 0.49
%ile 64.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7289.80.96Os01g0811300AK065227.1--2e+0At1g73100SUVH3 (SU(VAR)3-9 HOMOLOG 3)O.I.H.G.S.X.
0.6787.20.96Os03g0616300AK102930.1-DNA-directed polymerase kappa2e-8At1g49980DNA-directed DNA polymerase/ damaged DNA bindingO.I.H.G.S.X.
0.6583.80.97Os08g0484400AK065727.1-Bacterial Fmu (Sun)/eukaryotic nucleolarNOL1/Nop2p domain containing protein4e-10At2g22400NOL1/NOP2/sun family proteinO.I.H.G.S.X.
0.5877.00.96Os08g0520400AK064309.1-Conserved hypothetical protein2e+0At5g23940EMB3009 (embryo defective 3009)O.I.H.G.S.X.
0.5573.70.97Os03g0849700AK111868.1-TPR-like domain containing protein1e-1At4g02750pentatricopeptide (PPR) repeat-containing proteinO.I.H.G.S.X.
0.5471.90.96Os11g0584100AK069971.1-Cyclin-like F-box domain containing protein2e+1At5g32597unknown proteinO.I.H.G.S.X.
0.5269.60.97Os08g0166500AK103907.1-Hypothetical protein5e-2At3g09735DNA-binding S1FA family proteinO.I.H.G.S.X.
0.5269.60.97Os04g0528400AK101159.1-Hus1-like protein family protein2e-8At1g17840WBC11 (WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11)O.I.H.G.S.X.
0.4355.40.97Os07g0513600CA765832-Chaperone DnaJ, C-terminal domain containingprotein2e+0At5g24316proline-rich family proteinO.I.H.G.S.X.
0.4355.40.97Os02g0301000AK063049.1-Zn-finger, C-x8-C-x5-C-x3-H type domain containingprotein7e-8At1g01350nucleic acid binding / protein binding / zinc ion bindingO.I.H.G.S.X.
0.3846.90.97Os10g0145100AK073677.1-Cyclin-like F-box domain containing protein2e-1At5g64690neurofilament triplet H protein-relatedO.I.H.G.S.X.
0.3745.00.96Os02g0772300AK071492.1-GCN5-related N-acetyltransferase domain containingprotein3e+0At5g49540unknown proteinO.I.H.G.S.X.
0.3338.80.96Os05g0370000AK069708.1-TPR-like domain containing protein8e-2At2g37320pentatricopeptide (PPR) repeat-containing proteinO.I.H.G.S.X.
0.3134.50.97Os02g07808009630.m05348-Helicase, C-terminal domain containing protein3e-1At2g3448060S ribosomal protein L18A (RPL18aB)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
17.498.9GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
15.198.6GSM422674Musa_DNA_RICEGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
14.698.6GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
12.698.4GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.298.2GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.198.2GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.798.1GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.798.0GSM377085Genomic DNA - 45 day old leaf sample - mutant f2045GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.697.9GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.697.9GSM377082Genomic DNA - 45 day old leaf sample - mutant g9799GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0381GO:0006281The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage