CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0810100

Gene name
Homology with Arabidopsis Similar to At4g37510: ribonuclease III family protein (HF=3e-22)

Module size 6 genes

NF 0.34

%ile 38.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 0.93 Os01g0810100 AK071916.1 - Ribonuclease III domain containing protein 3e-22 At4g37510 ribonuclease III family protein O.I. H.G. S.X.
0.43 55.4 0.93 Os02g0730800 AK066980.1 - - 1e-8 At3g20930 RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.
0.40 51.1 0.92 Os10g0111300 CB638003 - TGF-beta receptor, type I/II extracellular regionfamily protein 1e-3 At1g69860 proton-dependent oligopeptide transport (POT) family protein O.I. H.G. S.X.
0.33 38.8 0.93 Os03g0769600 AK100054.1 - ResB-like family protein 7e-5 At1g49380 cytochrome c biogenesis protein family O.I. H.G. S.X.
0.25 24.1 0.93 Os02g0726600 AK064213.1 - Conserved hypothetical protein 5e+0 At5g67060 HEC1 (HECATE 1) O.I. H.G. S.X.
0.22 19.4 0.93 Os07g0548300 NM_185739.1 - CRP1 4e-6 At5g42310 pentatricopeptide (PPR) repeat-containing protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
57.6 99.9 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
22.0 99.3 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.0 98.3 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.6 98.2 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.3 98.2 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
10.6 98.1 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.2 98.0 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.0 97.8 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.8 97.8 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.3 97.7 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.047 1 GO:0006396 Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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