CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0809000

Gene name
Homology with Arabidopsis Similar to At1g12830: unknown protein (HF=4e-1)

Module size 8 genes

NF 0.53

%ile 71.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.74 91.4 0.98 Os01g0809000 AK119363.1 - Conserved hypothetical protein 4e-1 At1g12830 unknown protein O.I. H.G. S.X.
0.61 81.2 0.98 Os04g0374400 9632.m02899 - - 7e-1 At5g55570 unknown protein O.I. H.G. S.X.
0.60 79.7 0.98 Os10g0571700 AK063029.1 - Conserved hypothetical protein 3e-1 At1g02840 SR1 O.I. H.G. S.X.
0.50 68.0 0.98 Os03g0417600 9631.m02977 - - 1e+1 At5g24660 LSU2 (RESPONSE TO LOW SULFUR 2) O.I. H.G. S.X.
0.48 63.7 0.98 Os01g0639700 NM_192259.1 - - 7e+0 At2g33430 DAL1 (DIFFERENTIATION AND GREENING-LIKE 1) O.I. H.G. S.X.
0.47 62.3 0.98 Os02g0524500 9630.m03071 - Zn-finger, RING domain containing protein 4e-2 At3g15030 TCP4 (TCP family transcription factor 4) O.I. H.G. S.X.
0.35 41.7 0.98 Os01g0324800 NM_183801.1 - - 4e-1 At2g15580 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.33 38.8 0.98 Os05g0504400 9633.m03980 - - 9e+0 At2g30695 - O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
33.6 99.8 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
18.0 98.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
17.1 98.8 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.7 98.8 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.5 98.8 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.3 98.8 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.2 98.8 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.1 98.7 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.4 98.7 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.9 98.6 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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