CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0792400

Gene name
Homology with Arabidopsis Similar to Atcg00520: - (HF=2e-53)

Module size 6 genes

NF 0.90

%ile 99.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.95 Os01g0792400 AK062797.1 - Photosystem I assembly protein ycf4 2e-53 Atcg00520 - O.I. H.G. S.X.
0.91 98.9 0.93 Os06g0598500 AK058623.1 - Ribulose bisphosphate carboxylase large chainprecursor (EC 4.1.1.39) (RuBisCO large subunit) 0 Atcg00490 - O.I. H.G. S.X.
0.83 95.8 0.92 Os01g0791600 9633.m03286 - Ribulose bisphosphate carboxylase large chainprecursor (EC 4.1.1.39) (RuBisCO large subunit) 4e-129 Atcg00490 - O.I. H.G. S.X.
0.83 95.8 0.94 Os04g0235600 CR291556 - ATP synthase B chain (EC 3.6.3.14) (Subunit I) 2e-42 Atcg00130 - O.I. H.G. S.X.
0.77 93.1 0.93 Os10g0527100 BI795990 - Chloroplast ATP synthase a chain precursor (EC3.6.3.14) (ATPase subunit IV) 2e+0 At5g15850 COL1 (constans-like 1) O.I. H.G. S.X.
0.67 87.2 0.96 Os01g0749400 AK067731.1 - Glycosyl transferase, family 20 domain containingprotein 2e-12 At1g06410 ATTPS7 O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	98.9	0.95	Os01g0792400	AK062797.1	-	Photosystem I assembly protein ycf4	2e-53	Atcg00520	-	O.I.	H.G.	S.X.
0.91	98.9	0.93	Os06g0598500	AK058623.1	-	Ribulose bisphosphate carboxylase large chainprecursor (EC 4.1.1.39) (RuBisCO large subunit)	0	Atcg00490	-	O.I.	H.G.	S.X.
0.83	95.8	0.92	Os01g0791600	9633.m03286	-	Ribulose bisphosphate carboxylase large chainprecursor (EC 4.1.1.39) (RuBisCO large subunit)	4e-129	Atcg00490	-	O.I.	H.G.	S.X.
0.83	95.8	0.94	Os04g0235600	CR291556	-	ATP synthase B chain (EC 3.6.3.14) (Subunit I)	2e-42	Atcg00130	-	O.I.	H.G.	S.X.
0.77	93.1	0.93	Os10g0527100	BI795990	-	Chloroplast ATP synthase a chain precursor (EC3.6.3.14) (ATPase subunit IV)	2e+0	At5g15850	COL1 (constans-like 1)	O.I.	H.G.	S.X.
0.67	87.2	0.96	Os01g0749400	AK067731.1	-	Glycosyl transferase, family 20 domain containingprotein	2e-12	At1g06410	ATTPS7	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
31.4 99.7 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
23.4 99.4 GSM377083 Genomic DNA - 45 day old leaf sample - mutant g6989 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.1 98.8 GSM377079 Genomic DNA - 45 day old leaf sample - mutant g6686 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.9 98.8 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.1 98.7 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.9 98.7 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.1 98.6 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.9 98.6 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.4 98.6 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.3 98.6 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
31.4	99.7	GSM422674	Musa_DNA_RICE	GSE16865	Heterologous microarrays for the study of drought stress in Musa
23.4	99.4	GSM377083	Genomic DNA - 45 day old leaf sample - mutant g6989	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.1	98.8	GSM377079	Genomic DNA - 45 day old leaf sample - mutant g6686	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.9	98.8	GSM377086	Genomic DNA - 45 day old leaf sample - IR64 wtcheck	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.1	98.7	GSM377082	Genomic DNA - 45 day old leaf sample - mutant g9799	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.9	98.7	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.1	98.6	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.9	98.6	GSM377072	Genomic DNA - 45 day old leaf sample - mutant d1137	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.4	98.6	GSM377074	Genomic DNA - 45 day old leaf sample - mutant g282	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.3	98.6	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.105 1 GO:0005992 The chemical reactions and pathways resulting in the formation of trehalose, a disaccharide isomeric with sucrose and obtained from certain lichens and fungi.
0.087 1 GO:0006818 The directed movement of hydrogen (H2 or H+), into, out of, within or between cells.
0.063 1 GO:0015992 The directed movement of protons (hydrogen ions) into, out of, within or between cells.

SF	Genes	GO ID	Process Name
0.105	1	GO:0005992	The chemical reactions and pathways resulting in the formation of trehalose, a disaccharide isomeric with sucrose and obtained from certain lichens and fungi.
0.087	1	GO:0006818	The directed movement of hydrogen (H2 or H+), into, out of, within or between cells.
0.063	1	GO:0015992	The directed movement of protons (hydrogen ions) into, out of, within or between cells.

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.6885.1.S1_at, orthologous to the query gene, Os01g0792400

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.81 92.4 TaAffx.6885.1.S1_at Atcg00520 - - 2e-27 Atcg00520 - O.I. H.G. S.X.
0.81 92.4 Ta.28363.1.A1_x_at Atcg00520 - - 1e-1 At5g64040 PSAN O.I. H.G. S.X.
0.80 92.2 Ta.20429.2.S1_at Atcg00520 - - 1e-21 At4g38970 fructose-bisphosphate aldolase, putative O.I. H.G. S.X.
0.80 92.2 Ta.27761.3.S1_x_at Atcg00520 - - 5e-9 At1g30380 PSAK (photosystem I subunit K) O.I. H.G. S.X.
0.77 90.8 Ta.27660.1.S1_at Atcg00520 ribulose-1,5-bisphosphate carboxylase activase - 5e-89 At2g39730 RCA (RUBISCO ACTIVASE) O.I. H.G. S.X.
0.76 90.1 Ta.1139.1.S1_at Atcg00520 - - 5e-14 At4g10340 LHCB5 (LIGHT HARVESTING COMPLEX OF PHOTOSYSTEM II 5) O.I. H.G. S.X.
0.75 89.8 Ta.27660.1.S1_x_at Atcg00520 ribulose-1,5-bisphosphate carboxylase activase - 5e-89 At2g39730 RCA (RUBISCO ACTIVASE) O.I. H.G. S.X.
0.74 89.4 Ta.28363.1.A1_at Atcg00520 - - 1e-1 At5g64040 PSAN O.I. H.G. S.X.
0.73 89.1 Ta.30795.1.S1_at Atcg00520 - - 6e-139 At4g33010 AtGLDP1 (Arabidopsis thaliana glycine decarboxylase P-protein 1) O.I. H.G. S.X.
0.72 88.3 Ta.1139.1.S1_x_at Atcg00520 - - 5e-14 At4g10340 LHCB5 (LIGHT HARVESTING COMPLEX OF PHOTOSYSTEM II 5) O.I. H.G. S.X.
0.71 88.0 Ta.347.2.S1_a_at Atcg00520 - - 1e+0 At5g61410 RPE O.I. H.G. S.X.
0.71 88.0 Ta.27761.1.S1_x_at Atcg00520 - - 7e-6 At1g30380 PSAK (photosystem I subunit K) O.I. H.G. S.X.
0.70 87.2 Ta.23158.1.S1_at Atcg00520 phosphoribulokinase - 4e-40 At1g32060 PRK (PHOSPHORIBULOKINASE) O.I. H.G. S.X.
0.70 87.2 Ta.28363.2.S1_at Atcg00520 - - 1e-4 At5g64040 PSAN O.I. H.G. S.X.
0.70 87.2 Ta.20639.1.S1_x_at Atcg00520 - - 9e-6 At3g47470 LHCA4 (LIGHT-HARVESTING CHLOROPHYLL-PROTEIN COMPLEX I SUBUNIT A4) O.I. H.G. S.X.
0.69 86.9 Ta.27761.2.S1_x_at Atcg00520 - - 5e-3 At1g30380 PSAK (photosystem I subunit K) O.I. H.G. S.X.
0.69 86.9 Ta.27646.1.S1_x_at Atcg00520 - - 7e-10 At1g61520 LHCA3 O.I. H.G. S.X.
0.68 86.5 Ta.2412.1.S1_x_at Atcg00520 - - 9e-6 At4g32260 ATP synthase family O.I. H.G. S.X.
0.68 86.5 Ta.2402.3.S1_x_at Atcg00520 - - 5e-22 At3g54890 LHCA1 O.I. H.G. S.X.
0.67 86.3 Ta.20639.3.S1_a_at Atcg00520 - - 8e-6 At3g47470 LHCA4 (LIGHT-HARVESTING CHLOROPHYLL-PROTEIN COMPLEX I SUBUNIT A4) O.I. H.G. S.X.
0.66 84.1 Ta.28697.3.S1_at Atcg00520 - - 8e-25 At3g61470 LHCA2 O.I. H.G. S.X.
0.64 83.6 Ta.347.3.S1_x_at Atcg00520 - - 3e+0 At5g20190 binding O.I. H.G. S.X.
0.63 83.1 Ta.1971.2.S1_x_at Atcg00520 - - 4e-1 At5g08290 YLS8 O.I. H.G. S.X.
0.62 82.3 Ta.1989.1.S1_a_at Atcg00520 - - 7e-6 At2g47400 CP12-1 O.I. H.G. S.X.
0.61 82.0 Ta.30808.1.S1_s_at Atcg00520 - - 4e-15 At3g26650 GAPA (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT) O.I. H.G. S.X.
0.61 82.0 Ta.1988.3.S1_at Atcg00520 - - 2e-20 At3g55800 SBPASE (sedoheptulose-bisphosphatase) O.I. H.G. S.X.
0.61 82.0 Ta.85.1.S1_at Atcg00520 23kDa oxygen evolving protein of photosystem II - 2e-10 At1g06680 PSBP-1 (PHOTOSYSTEM II SUBUNIT P-1) O.I. H.G. S.X.
0.60 81.0 Ta.27646.1.S1_at Atcg00520 - - 7e-10 At1g61520 LHCA3 O.I. H.G. S.X.
0.59 79.8 Ta.20639.2.A1_at Atcg00520 - - 3e-7 At3g47470 LHCA4 (LIGHT-HARVESTING CHLOROPHYLL-PROTEIN COMPLEX I SUBUNIT A4) O.I. H.G. S.X.
0.59 79.8 TaAffx.80290.2.S1_at Atcg00520 - - 7e-2 At1g10960 ATFD1 (FERREDOXIN 1) O.I. H.G. S.X.
0.57 79.2 TaAffx.108107.3.S1_x_at Atcg00520 - - 4e+0 At1g51950 IAA18 (INDOLE-3-ACETIC ACID INDUCIBLE 18) O.I. H.G. S.X.
0.55 76.8 Ta.1971.1.S1_a_at Atcg00520 - - 5e-1 At5g08290 YLS8 O.I. H.G. S.X.
0.54 75.5 Ta.28265.1.S1_at Atcg00520 oxygen-evolving complex precursor - 2e+0 At4g21280 oxygen-evolving enhancer protein 3, chloroplast, putative (PSBQ1) (PSBQ) O.I. H.G. S.X.
0.40 58.4 Ta.1978.1.S1_a_at Atcg00520 - - 1e+0 At1g16880 uridylyltransferase-related O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.81	92.4	TaAffx.6885.1.S1_at	Atcg00520	-	-	2e-27	Atcg00520	-	O.I.	H.G.	S.X.
0.81	92.4	Ta.28363.1.A1_x_at	Atcg00520	-	-	1e-1	At5g64040	PSAN	O.I.	H.G.	S.X.
0.80	92.2	Ta.20429.2.S1_at	Atcg00520	-	-	1e-21	At4g38970	fructose-bisphosphate aldolase, putative	O.I.	H.G.	S.X.
0.80	92.2	Ta.27761.3.S1_x_at	Atcg00520	-	-	5e-9	At1g30380	PSAK (photosystem I subunit K)	O.I.	H.G.	S.X.
0.77	90.8	Ta.27660.1.S1_at	Atcg00520	ribulose-1,5-bisphosphate carboxylase activase	-	5e-89	At2g39730	RCA (RUBISCO ACTIVASE)	O.I.	H.G.	S.X.
0.76	90.1	Ta.1139.1.S1_at	Atcg00520	-	-	5e-14	At4g10340	LHCB5 (LIGHT HARVESTING COMPLEX OF PHOTOSYSTEM II 5)	O.I.	H.G.	S.X.
0.75	89.8	Ta.27660.1.S1_x_at	Atcg00520	ribulose-1,5-bisphosphate carboxylase activase	-	5e-89	At2g39730	RCA (RUBISCO ACTIVASE)	O.I.	H.G.	S.X.
0.74	89.4	Ta.28363.1.A1_at	Atcg00520	-	-	1e-1	At5g64040	PSAN	O.I.	H.G.	S.X.
0.73	89.1	Ta.30795.1.S1_at	Atcg00520	-	-	6e-139	At4g33010	AtGLDP1 (Arabidopsis thaliana glycine decarboxylase P-protein 1)	O.I.	H.G.	S.X.
0.72	88.3	Ta.1139.1.S1_x_at	Atcg00520	-	-	5e-14	At4g10340	LHCB5 (LIGHT HARVESTING COMPLEX OF PHOTOSYSTEM II 5)	O.I.	H.G.	S.X.
0.71	88.0	Ta.347.2.S1_a_at	Atcg00520	-	-	1e+0	At5g61410	RPE	O.I.	H.G.	S.X.
0.71	88.0	Ta.27761.1.S1_x_at	Atcg00520	-	-	7e-6	At1g30380	PSAK (photosystem I subunit K)	O.I.	H.G.	S.X.
0.70	87.2	Ta.23158.1.S1_at	Atcg00520	phosphoribulokinase	-	4e-40	At1g32060	PRK (PHOSPHORIBULOKINASE)	O.I.	H.G.	S.X.
0.70	87.2	Ta.28363.2.S1_at	Atcg00520	-	-	1e-4	At5g64040	PSAN	O.I.	H.G.	S.X.
0.70	87.2	Ta.20639.1.S1_x_at	Atcg00520	-	-	9e-6	At3g47470	LHCA4 (LIGHT-HARVESTING CHLOROPHYLL-PROTEIN COMPLEX I SUBUNIT A4)	O.I.	H.G.	S.X.
0.69	86.9	Ta.27761.2.S1_x_at	Atcg00520	-	-	5e-3	At1g30380	PSAK (photosystem I subunit K)	O.I.	H.G.	S.X.
0.69	86.9	Ta.27646.1.S1_x_at	Atcg00520	-	-	7e-10	At1g61520	LHCA3	O.I.	H.G.	S.X.
0.68	86.5	Ta.2412.1.S1_x_at	Atcg00520	-	-	9e-6	At4g32260	ATP synthase family	O.I.	H.G.	S.X.
0.68	86.5	Ta.2402.3.S1_x_at	Atcg00520	-	-	5e-22	At3g54890	LHCA1	O.I.	H.G.	S.X.
0.67	86.3	Ta.20639.3.S1_a_at	Atcg00520	-	-	8e-6	At3g47470	LHCA4 (LIGHT-HARVESTING CHLOROPHYLL-PROTEIN COMPLEX I SUBUNIT A4)	O.I.	H.G.	S.X.
0.66	84.1	Ta.28697.3.S1_at	Atcg00520	-	-	8e-25	At3g61470	LHCA2	O.I.	H.G.	S.X.
0.64	83.6	Ta.347.3.S1_x_at	Atcg00520	-	-	3e+0	At5g20190	binding	O.I.	H.G.	S.X.
0.63	83.1	Ta.1971.2.S1_x_at	Atcg00520	-	-	4e-1	At5g08290	YLS8	O.I.	H.G.	S.X.
0.62	82.3	Ta.1989.1.S1_a_at	Atcg00520	-	-	7e-6	At2g47400	CP12-1	O.I.	H.G.	S.X.
0.61	82.0	Ta.30808.1.S1_s_at	Atcg00520	-	-	4e-15	At3g26650	GAPA (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT)	O.I.	H.G.	S.X.
0.61	82.0	Ta.1988.3.S1_at	Atcg00520	-	-	2e-20	At3g55800	SBPASE (sedoheptulose-bisphosphatase)	O.I.	H.G.	S.X.
0.61	82.0	Ta.85.1.S1_at	Atcg00520	23kDa oxygen evolving protein of photosystem II	-	2e-10	At1g06680	PSBP-1 (PHOTOSYSTEM II SUBUNIT P-1)	O.I.	H.G.	S.X.
0.60	81.0	Ta.27646.1.S1_at	Atcg00520	-	-	7e-10	At1g61520	LHCA3	O.I.	H.G.	S.X.
0.59	79.8	Ta.20639.2.A1_at	Atcg00520	-	-	3e-7	At3g47470	LHCA4 (LIGHT-HARVESTING CHLOROPHYLL-PROTEIN COMPLEX I SUBUNIT A4)	O.I.	H.G.	S.X.
0.59	79.8	TaAffx.80290.2.S1_at	Atcg00520	-	-	7e-2	At1g10960	ATFD1 (FERREDOXIN 1)	O.I.	H.G.	S.X.
0.57	79.2	TaAffx.108107.3.S1_x_at	Atcg00520	-	-	4e+0	At1g51950	IAA18 (INDOLE-3-ACETIC ACID INDUCIBLE 18)	O.I.	H.G.	S.X.
0.55	76.8	Ta.1971.1.S1_a_at	Atcg00520	-	-	5e-1	At5g08290	YLS8	O.I.	H.G.	S.X.
0.54	75.5	Ta.28265.1.S1_at	Atcg00520	oxygen-evolving complex precursor	-	2e+0	At4g21280	oxygen-evolving enhancer protein 3, chloroplast, putative (PSBQ1) (PSBQ)	O.I.	H.G.	S.X.
0.40	58.4	Ta.1978.1.S1_a_at	Atcg00520	-	-	1e+0	At1g16880	uridylyltransferase-related	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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Gene ID	Os01g0792400
Gene name
Homology with Arabidopsis	Similar to Atcg00520: - (HF=2e-53)
Module size	6 genes
NF	0.90
%ile	99.8

Co-expression analysis

Gene ID Os01g0792400 Gene name Homology with ArabidopsisSimilar to Atcg00520: - (HF=2e-53) Module size 6 genes NF 0.90 %ile 99.8

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaVitis_viniferaZea_mays

Gene ID Os01g0792400

Gene name
Homology with Arabidopsis Similar to Atcg00520: - (HF=2e-53)

Module size 6 genes

NF 0.90

%ile 99.8

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Vitis_vinifera
Zea_mays