CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0792400

Gene name
Homology with Arabidopsis Similar to Atcg00520: - (HF=2e-53)

Module size 6 genes

NF 0.90

%ile 99.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.95 Os01g0792400 AK062797.1 - Photosystem I assembly protein ycf4 2e-53 Atcg00520 - O.I. H.G. S.X.
0.91 98.9 0.93 Os06g0598500 AK058623.1 - Ribulose bisphosphate carboxylase large chainprecursor (EC 4.1.1.39) (RuBisCO large subunit) 0 Atcg00490 - O.I. H.G. S.X.
0.83 95.8 0.92 Os01g0791600 9633.m03286 - Ribulose bisphosphate carboxylase large chainprecursor (EC 4.1.1.39) (RuBisCO large subunit) 4e-129 Atcg00490 - O.I. H.G. S.X.
0.83 95.8 0.94 Os04g0235600 CR291556 - ATP synthase B chain (EC 3.6.3.14) (Subunit I) 2e-42 Atcg00130 - O.I. H.G. S.X.
0.77 93.1 0.93 Os10g0527100 BI795990 - Chloroplast ATP synthase a chain precursor (EC3.6.3.14) (ATPase subunit IV) 2e+0 At5g15850 COL1 (constans-like 1) O.I. H.G. S.X.
0.67 87.2 0.96 Os01g0749400 AK067731.1 - Glycosyl transferase, family 20 domain containingprotein 2e-12 At1g06410 ATTPS7 O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
31.4 99.7 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
23.4 99.4 GSM377083 Genomic DNA - 45 day old leaf sample - mutant g6989 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.1 98.8 GSM377079 Genomic DNA - 45 day old leaf sample - mutant g6686 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.9 98.8 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.1 98.7 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.9 98.7 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.1 98.6 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.9 98.6 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.4 98.6 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.3 98.6 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.105 1 GO:0005992 The chemical reactions and pathways resulting in the formation of trehalose, a disaccharide isomeric with sucrose and obtained from certain lichens and fungi.
0.087 1 GO:0006818 The directed movement of hydrogen (H2 or H+), into, out of, within or between cells.
0.063 1 GO:0015992 The directed movement of protons (hydrogen ions) into, out of, within or between cells.

Inter-species module comparison

A co-expression module including the soybean gene, HgAffx.7330.1.S1_at, orthologous to the query gene, Os01g0792400

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.6 HgAffx.7330.1.S1_at Atcg00520 - - 2e-1 Atcg00520 - O.I. H.G. S.X.
0.44 63.3 PsAffx.psZS003xA01f_at Atcg00520 - - 5e+0 At5g22650 HD2B (HISTONE DEACETYLASE 2B) O.I. H.G. S.X.
0.29 39.0 PsAffx.C6000181_at Atcg00520 - - 4e+0 At5g54500 FQR1 (FLAVODOXIN-LIKE QUINONE REDUCTASE 1) O.I. H.G. S.X.
0.21 26.6 PsAffx.C38000019_at Atcg00520 - - 2e-1 At2g02061 unknown protein O.I. H.G. S.X.
0.13 16.3 PsAffx.psZG005xN22f_s_at Atcg00520 - - 9e+0 At5g14602 unknown protein O.I. H.G. S.X.
0.01 3.4 PsAffx.psHA010iH10r_s_at Atcg00520 - - 1e+1 At5g30341 unknown protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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