CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0769700

Gene name
Homology with Arabidopsis Similar to At3g51550: FER (FERONIA) (HF=6e-74)

Module size 6 genes

NF 0.23

%ile 22.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.56 76.3 0.90 Os01g0769700 AK105465.1 - LpimPth4 6e-74 At3g51550 FER (FERONIA) O.I. H.G. S.X.
0.29 31.1 0.92 Os04g0608900 AK111698.1 - Serine/threonine/tyrosine kinase 3e-10 At4g31170 protein kinase family protein O.I. H.G. S.X.
0.25 24.1 0.91 Os09g0492700 AK101104.1 - 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1(EC 1.1.1.34) (HMG- CoA reductase 1) (HMGR1) 3e-14 At1g76490 HMG1 (HYDROXY METHYLGLUTARYL COA REDUCTASE 1) O.I. H.G. S.X.
0.23 21.2 0.90 Os03g0264000 AK101372.1 - LAG1 homolog 2 2e-4 At3g19260 LOH2 (LAG ONE HOMOLOGUE 2) O.I. H.G. S.X.
0.19 15.1 0.90 Os02g0732200 AK102091.1 - U box domain containing protein 1e-9 At1g23030 armadillo/beta-catenin repeat family protein / U-box domain-containing protein O.I. H.G. S.X.
0.08 4.2 0.91 Os01g0652800 AK061145.1 - Hypothetical protein 2e-1 At5g15900 unknown protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
23.4 99.4 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
17.7 98.9 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.7 98.8 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.2 98.5 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.0 98.4 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.6 98.4 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.2 98.3 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.1 98.3 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.0 98.3 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.8 98.3 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.044 1 GO:0006629 The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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