CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0757200

Gene name
Homology with Arabidopsis Similar to At1g30040: ATGA2OX2 (GIBBERELLIN 2-OXIDASE) (HF=6e-5)

Module size 19 genes

NF 0.26

%ile 25.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.86 96.4 0.77 Os01g0757200 AK101713.1 - Gibberellin 2-beta-dioxygenase (EC 1.14.11.13)(Gibberellin 2-beta- hydroxylase) (Gibberellin 2-oxidase)(GA 2-oxidase) 6e-5 At1g30040 ATGA2OX2 (GIBBERELLIN 2-OXIDASE) O.I. H.G. S.X.
0.43 55.4 0.89 Os04g0674000 AK119671.1 - Conserved hypothetical protein 7e-1 At4g16240 unknown protein O.I. H.G. S.X.
0.38 46.9 0.92 Os04g0543500 9632.m04421 - Homeodomain-like containing protein 2e+0 At2g44730 transcription factor O.I. H.G. S.X.
0.36 44.0 0.90 Os09g0486500 AF140722.2 - Multiple stress-responsive zinc-finger protein(Multiple stress- associated zinc-finger protein) 2e+0 At5g24290 integral membrane family protein O.I. H.G. S.X.
0.34 40.0 0.90 Os01g0667900 AK105335.1 - Glutaredoxin domain containing protein 2e+0 At4g38140 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.33 38.8 0.90 Os02g0790500 AK066691.1 - Glycosyl transferase, family 20 domain containingprotein 3e-11 At1g68020 ATTPS6 O.I. H.G. S.X.
0.31 34.5 0.86 Os06g0318800 AK062356.1 - Hypothetical protein 5e-3 At4g02235 AGL51 O.I. H.G. S.X.
0.28 31.1 0.89 Os03g0761100 AK066083.1 - Protein phosphatase 2C-like protein 6e-8 At4g33920 protein phosphatase 2C family protein / PP2C family protein O.I. H.G. S.X.
0.27 27.5 0.80 Os07g0691300 AK069499.1 - Wound-induced WI12 family protein 4e-1 At5g17660 tRNA (guanine-N7-)-methyltransferase O.I. H.G. S.X.
0.24 22.4 0.90 Os10g0392400 AK061602.1 - ZIM domain containing protein 5e-1 At5g56320 ATEXPA14 (ARABIDOPSIS THALIANA EXPANSIN A14) O.I. H.G. S.X.
0.24 22.4 0.86 Os01g0884300 AK068392.1 - No apical meristem (NAM) protein domain containingprotein 7e-29 At1g01720 ATAF1 O.I. H.G. S.X.
0.22 19.4 0.87 Os01g0295700 AK070333.1 - Protein phosphatase-2C 5e-5 At2g33700 protein phosphatase 2C, putative / PP2C, putative O.I. H.G. S.X.
0.18 13.7 0.89 Os01g0305200 NM_189297.1 - Conserved hypothetical protein 2e-1 At1g11890 SEC22 O.I. H.G. S.X.
0.17 12.6 0.89 Os01g0850100 AK071523.1 - Conserved hypothetical protein 2e-5 At3g54020 phosphatidic acid phosphatase-related / PAP2-related O.I. H.G. S.X.
0.16 11.3 0.89 Os08g0558100 AK065151.1 - Calcium-binding EF-hand domain containing protein 1e-1 At2g27130 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein O.I. H.G. S.X.
0.14 9.3 0.88 Os05g0287800 AK071727.1 - Conserved hypothetical protein 7e-11 At2g37940 - O.I. H.G. S.X.
0.13 8.2 0.84 Os08g0482700 AK066830.1 - Plastocyanin-like domain containing protein 4e-2 At3g63230 unknown protein O.I. H.G. S.X.
0.12 7.2 0.83 Os05g0522600 AK072881.1 - Leucine-rich repeat, plant specific containingprotein 3e-2 At1g48480 RKL1 O.I. H.G. S.X.
0.12 7.2 0.84 Os03g0123800 AK069496.1 - Conserved hypothetical protein 6e-1 At2g22080 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.6 97.9 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.1 97.9 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.0 97.8 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.7 97.8 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.5 97.7 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.3 97.7 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.1 97.7 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.9 97.6 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.9 97.6 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.8 97.6 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.065 1 GO:0009685 The chemical reactions and pathways involving gibberellin. Gibberellins are a class of highly modified terpenes that function as plant growth regulators.
0.063 1 GO:0005992 The chemical reactions and pathways resulting in the formation of trehalose, a disaccharide isomeric with sucrose and obtained from certain lichens and fungi.
0.062 2 GO:0006470 The process of removing one or more phosphoric residues from a protein.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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