CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0750100

Gene name
Homology with Arabidopsis Similar to At3g58710: WRKY69 (HF=1e-11)

Module size 6 genes

NF 0.05

%ile 3.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.56 76.3 0.70 Os01g0750100 AK067329.1 - WRKY transcription factor 31 1e-11 At3g58710 WRKY69 O.I. H.G. S.X.
0.50 68.0 0.70 Os11g0471200 AK066957.1 - Conserved hypothetical protein 9e-2 At1g15430 - O.I. H.G. S.X.
0.25 24.1 0.80 Os12g0231000 AK120737.1 - TGF-beta receptor, type I/II extracellular regionfamily protein 1e+0 At1g68480 JAG (JAGGED) O.I. H.G. S.X.
0.04 2.0 0.80 Os07g0222900 CB645570 - KDPG and KHG aldolase family protein 3e+0 At3g52720 ACA1 (ALPHA CARBONIC ANHYDRASE 1) O.I. H.G. S.X.
0.03 1.4 0.76 Os02g0495400 AK103135.1 - ARM repeat fold domain containing protein 3e-1 At3g55010 PUR5 O.I. H.G. S.X.
0.02 1.0 0.77 Os01g0893400 NM_190241.1 - BTB/POZ domain containing protein 4e-3 At1g05690 BT3 (BTB AND TAZ DOMAIN PROTEIN 3) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
42.9 99.9 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
28.3 99.6 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.2 98.2 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.4 98.1 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.9 98.0 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
9.1 97.9 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.1 97.9 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.0 97.8 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.8 97.8 GSM375766 gid1-3_ shoot_replicate 2 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
8.6 97.8 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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