CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0749200

Gene name
Homology with Arabidopsis Similar to At1g78630: emb1473 (embryo defective 1473) (HF=1e-20)

Module size 6 genes

NF 0.72

%ile 94.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.98 Os01g0749200 AK104146.1 - 50S ribosomal protein L13 1e-20 At1g78630 emb1473 (embryo defective 1473) O.I. H.G. S.X.
0.73 91.1 0.98 Os02g0259600 AK062182.1 - 50S ribosomal protein L21, chloroplast precursor(CL21) (CS-L7) 2e-3 At1g35680 50S ribosomal protein L21, chloroplast / CL21 (RPL21) O.I. H.G. S.X.
0.73 91.1 0.98 Os02g0822600 AK060728.1 - 50S ribosomal protein L9, chloroplast precursor(CL13) 2e+0 At3g44890 RPL9 (RIBOSOMAL PROTEIN L9) O.I. H.G. S.X.
0.67 87.2 0.98 Os01g0278900 AK120429.1 - Hypothetical protein 3e-7 At3g56910 PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5) O.I. H.G. S.X.
0.60 79.7 0.99 Os01g0678600 AK120629.1 - Ribosomal protein S20 family protein 1e-1 At4g30460 glycine-rich protein O.I. H.G. S.X.
0.40 51.1 0.98 Os03g0704000 CR281175 - 30S ribosomal protein S13, chloroplast precursor(CS13) 1e-1 At5g14320 30S ribosomal protein S13, chloroplast (CS13) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.0 98.4 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.1 98.3 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.4 98.2 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.1 98.2 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.9 98.1 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.4 98.1 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.1 97.9 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.7 97.8 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.7 97.8 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.4 97.7 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.14466.1.S1_at, orthologous to the query gene, Os01g0749200

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.64 88.4 PtpAffx.14466.1.S1_at At1g78630 - - 1e-88 At1g78630 emb1473 (embryo defective 1473) O.I. H.G. S.X.
0.67 91.1 PtpAffx.122999.3.S1_a_at At1g78630 hypothetical protein - 9e-11 At3g24590 PLSP1 (plastidic type I signal peptidase 1) O.I. H.G. S.X.
0.57 84.2 PtpAffx.121699.1.A1_at At1g78630 hypothetical protein - 3e-17 At5g52960 unknown protein O.I. H.G. S.X.
0.54 80.8 PtpAffx.201033.1.S1_at At1g78630 - - 3e-31 At3g27180 unknown protein O.I. H.G. S.X.
0.44 71.9 PtpAffx.60542.1.S1_at At1g78630 hypothetical protein - 2e-9 At4g03150 unknown protein O.I. H.G. S.X.
0.37 62.3 PtpAffx.18034.1.A1_at At1g78630 hypothetical protein - 1e-8 At3g21200 unknown protein O.I. H.G. S.X.
0.34 58.3 PtpAffx.104487.1.S1_at At1g78630 hypothetical protein - 6e-22 At3g60370 immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein O.I. H.G. S.X.
0.30 52.0 PtpAffx.6001.1.S1_at At1g78630 hypothetical protein - 3e-43 At2g28000 CPN60A (CHAPERONIN-60ALPHA) O.I. H.G. S.X.
0.23 40.5 Ptp.7668.1.S1_at At1g78630 hypothetical protein - 4e+0 At3g23320 nucleic acid binding O.I. H.G. S.X.
0.17 29.1 PtpAffx.139950.1.A1_at At1g78630 hypothetical protein - 6e-49 At1g32990 PRPL11 (PLASTID RIBOSOMAL PROTEIN L11) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays

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