CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0744300

Gene name
Homology with Arabidopsis Similar to At2g25760: protein kinase family protein (HF=4e-15)

Module size 7 genes

NF 0.45

%ile 57.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.55 73.7 0.98 Os01g0744300 NM_191171.1 - Casein kinase-like protein 4e-15 At2g25760 protein kinase family protein O.I. H.G. S.X.
0.52 69.6 0.98 Os09g0281600 AK067020.1 - SWAP/Surp domain containing protein 6e-12 At3g52120 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein O.I. H.G. S.X.
0.50 68.0 0.97 Os08g0537800 AK059388.1 - The start codon is not identified. 4e-2 At2g37600 60S ribosomal protein L36 (RPL36A) O.I. H.G. S.X.
0.50 68.0 0.98 Os08g0502800 AK105444.1 - SWIB/MDM2 domain containing protein 2e-5 At4g22360 SWIB complex BAF60b domain-containing protein O.I. H.G. S.X.
0.40 51.1 0.98 Os03g0786800 AK059186.1 - The start codon is not identified. 4e-54 At5g46210 CUL4 (CULLIN4) O.I. H.G. S.X.
0.35 41.7 0.97 Os07g0497000 AK100332.1 - Chromodomain helicase-DNA-binding protein Mi-2homolog (dMi-2) 2e-48 At5g44800 CHR4 (CHROMATIN REMODELING 4) O.I. H.G. S.X.
0.35 41.7 0.97 Os03g0750800 AK061386.1 - Transcriptional adaptor ADA2b (AT4g16420/dl4235c) 9e-11 At4g16420 ADA2B (HOMOLOG OF YEAST ADA2 2B) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.9 98.5 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
6.4 97.2 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.6 96.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
5.4 96.8 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.0 96.6 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.0 96.6 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.8 96.5 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.8 96.5 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.7 96.4 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.6 96.3 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.100 1 GO:0007049 The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division.
0.063 1 GO:0006414 The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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