CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0743600

Gene name
Homology with Arabidopsis Similar to At4g02620: vacuolar ATPase subunit F family protein (HF=2e+0)

Module size 6 genes

NF 0.21

%ile 18.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 0.97 Os01g0743600 CB629272 - Peptidase S16, lon N-terminal domain containingprotein 2e+0 At4g02620 vacuolar ATPase subunit F family protein O.I. H.G. S.X.
0.73 91.1 0.97 Os01g0977400 AK101308.1 - TPR-like domain containing protein 2e-2 At4g18570 proline-rich family protein O.I. H.G. S.X.
0.55 73.7 0.96 Os02g0232100 AK100854.1 - Zn-finger, RING domain containing protein 6e-29 At1g53490 DNA binding O.I. H.G. S.X.
0.33 38.8 0.97 Os02g0148600 AK059287.1 - Conserved hypothetical protein 5e-4 At1g33250 fringe-related protein O.I. H.G. S.X.
0.14 9.3 0.97 Os02g0280200 9630.m05910 - Beta-glucanase family protein 2e-3 At4g28850 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative O.I. H.G. S.X.
0.06 3.0 0.97 Os12g0624100 AK107389.1 - Hypothetical protein 1e-2 At5g44450 methyltransferase O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
27.2 99.6 GSM195228 Embryo GSE7951 Genome-wide gene expression profiling of rice stigma
13.0 98.4 GSM159214 Seed (S3, 5 - 10 dap), biological rep 2 GSE6893 Expression data for reproductive development in rice
11.0 98.2 GSM159215 Seed (S3, 5 - 10 dap), biological rep 3 GSE6893 Expression data for reproductive development in rice
9.7 98.0 GSM159213 Seed (S3, 5 - 10 dap), biological rep 1 GSE6893 Expression data for reproductive development in rice
9.5 97.9 GSM159220 Seed (S5, 21 - 29 dap), biological rep 2 GSE6893 Expression data for reproductive development in rice
8.3 97.7 GSM195229 Endosperm GSE7951 Genome-wide gene expression profiling of rice stigma
8.2 97.7 GSM302915 emb6D_rep2 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
6.5 97.2 GSM159217 Seed (S4, 11 - 20 dap), biological rep 2 GSE6893 Expression data for reproductive development in rice
5.9 97.0 GSM159210 Seed (S2, 3 - 4 dap), biological rep 1 GSE6893 Expression data for reproductive development in rice
5.7 96.9 GSM302914 emb6D_rep1 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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