CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0739850

Gene name
Homology with Arabidopsis Similar to At3g23240: ERF1 (ETHYLENE RESPONSE FACTOR 1) (HF=6e-1)

Module size 6 genes

NF 0.76

%ile 96.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 0.99 Os01g0739850 9629.m05232 - - 6e-1 At3g23240 ERF1 (ETHYLENE RESPONSE FACTOR 1) O.I. H.G. S.X.
0.80 94.6 0.99 Os03g0239066 9631.m01290 - - 1e+0 At2g16510 vacuolar ATP synthase 16 kDa proteolipid subunit 5 / V-ATPase 16 kDa proteolipid subunit 5 (AVAP5) O.I. H.G. S.X.
0.77 93.1 0.99 Os12g0592700 9640.m03924 - - 2e+0 At4g20320 CTP synthase/ catalytic O.I. H.G. S.X.
0.73 91.1 0.99 Os05g0273600 9633.m01728 - - 3e+0 At5g13890 unknown protein O.I. H.G. S.X.
0.61 81.2 0.99 Os07g0503200 AK101518.1 - Conserved hypothetical protein 6e-2 At3g21760 UDP-glucoronosyl/UDP-glucosyl transferase family protein O.I. H.G. S.X.
0.61 81.2 0.99 Os10g0318100 NM_195619.1 - - 1e+1 At5g62330 - O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.8 98.5 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.2 98.4 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.0 98.3 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.2 98.2 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.0 98.2 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.6 98.1 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.3 98.1 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.0 98.0 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8 98.0 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.6 97.9 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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