CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0735300

Gene name
Homology with Arabidopsis Similar to At5g17050: UGT78D2 (UDP-GLUCOSYL TRANSFERASE 78D2) (HF=9e-4)

Module size 6 genes

NF 0.32

%ile 35.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 0.95 Os01g0735300 AK106947.1 - UDP-glucuronosyl/UDP-glucosyltransferase familyprotein 9e-4 At5g17050 UGT78D2 (UDP-GLUCOSYL TRANSFERASE 78D2) O.I. H.G. S.X.
0.63 82.7 0.93 Os07g0288700 AK100175.1 - ABC transporter related domain containing protein 3e-1 At1g17840 WBC11 (WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11) O.I. H.G. S.X.
0.44 58.1 0.95 Os12g0178000 CB623231 - Aldehyde dehydrogenase (EC 1.2.1.3) 9e-2 At4g36250 ALDH3F1 (Aldehyde Dehydrogenase 3F1) O.I. H.G. S.X.
0.40 51.1 0.95 Os02g0590100 9630.m03617 - Esterase/lipase/thioesterase domain containingprotein 8e+0 At5g43380 TOPP6 O.I. H.G. S.X.
0.33 38.8 0.94 Os03g0109800 AK066015.1 - Hypothetical protein 2e-1 At4g01985 unknown protein O.I. H.G. S.X.
0.08 4.2 0.93 Os01g0293900 9635.m00557 - Haem peroxidase, plant/fungal/bacterial familyprotein 2e+0 At1g32920 unknown protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
23.7 99.4 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
21.3 99.2 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.6 98.8 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.4 98.8 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.0 98.7 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.9 98.7 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.7 98.7 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.5 98.7 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.2 98.7 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.1 98.6 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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