CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0734200

Gene name
Homology with Arabidopsis Similar to At1g64060: ATRBOH F (ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE PROTEIN F) (HF=2e-31)

Module size 8 genes

NF 0.33

%ile 36.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.64 83.4 0.91 Os01g0734200 AK103747.1 - RbohAOsp (Fragment) 2e-31 At1g64060 ATRBOH F (ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE PROTEIN F) O.I. H.G. S.X.
0.55 73.7 0.94 Os04g0338000 AA754007 - IN2-2 protein 4e-1 At5g35300 unknown protein O.I. H.G. S.X.
0.47 62.3 0.92 Os10g0180000 AK070803.1 - NpGUT1 homolog 1e-15 At5g61840 GUT1 O.I. H.G. S.X.
0.27 27.5 0.94 Os02g0637700 AK073849.1 - Zinc-containing alcohol dehydrogenase superfamilyprotein 6e-11 At5g24760 alcohol dehydrogenase, putative O.I. H.G. S.X.
0.26 25.6 0.94 Os06g0175500 AK058599.1 - Epsin, N-terminal domain containing protein 8e-11 At5g35200 epsin N-terminal homology (ENTH) domain-containing protein O.I. H.G. S.X.
0.24 22.4 0.93 Os10g0422000 AK063303.1 - Hypothetical protein 9e-4 At4g02710 kinase interacting family protein O.I. H.G. S.X.
0.23 21.2 0.94 Os03g0815200 AK099527.1 - Methylenetetrahydrofolate reductase (EC 1.5.1.20) 3e-44 At2g44160 MTHFR2 (METHYLENETETRAHYDROFOLATE REDUCTASE 2) O.I. H.G. S.X.
0.16 11.3 0.93 Os02g0626100 AK121303.1 - Phenylalanine ammonia-lyase (EC 4.3.1.5) 4e+0 At2g03430 ankyrin repeat family protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.3 98.7 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.7 98.5 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.5 98.3 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.0 98.3 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7 98.2 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.7 98.1 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.6 98.1 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.3 98.1 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.2 98.0 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.2 98.0 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.222 1 GO:0006555 The chemical reactions and pathways involving methionine (2-amino-4-(methylthio)butanoic acid), a sulfur-containing, essential amino acid found in peptide linkage in proteins.
0.069 1 GO:0009987 Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.
0.053 1 GO:0015986 The transport of protons across a membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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