Co-expression analysis

Gene ID Os01g0720400
Gene name
Homology with ArabidopsisSimilar to At1g73010: phosphatase (HF=2e-6)
Module size 14 genes
NF 0.23
%ile 22.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5978.00.70Os01g0720400AK061237.1-HAD-superfamily subfamily IB hydrolase,hypothetical 1 protein2e-6At1g73010phosphataseO.I.H.G.S.X.
0.4458.10.86Os03g0197000AK071163.1-Conserved hypothetical protein2e-1At1g02405proline-rich family proteinO.I.H.G.S.X.
0.4051.10.86Os09g0438100AK063180.1-Conserved hypothetical protein1e-1At1g07950surfeit locus protein 5 family protein / SURF5 family proteinO.I.H.G.S.X.
0.3644.00.84Os02g0700400AB074005.1-Alternative oxidase AOX16e-4At3g22370AOX1A (ALTERNATIVE OXIDASE 1A)O.I.H.G.S.X.
0.3236.30.85Os05g0534400AK101368.1-Calcineurin B-like protein 89e-3At5g24270SOS3 (SALT OVERLY SENSITIVE 3)O.I.H.G.S.X.
0.3236.30.85Os01g0281000AK064952.1-Cyclin-like F-box domain containing protein2e-17At2g32560F-box family proteinO.I.H.G.S.X.
0.2625.60.89Os03g0176700CB617853-Hypothetical protein3e+0At5g65220ribosomal protein L29 family proteinO.I.H.G.S.X.
0.2625.60.91Os05g0586600AK105697.1-Plastid sigma factor SIG58e-1At2g33820MBAC1O.I.H.G.S.X.
0.2625.60.82Os03g0574900AK068853.1-K+ potassium transporter family protein1e+0At5g36805-O.I.H.G.S.X.
0.2625.60.86Os01g0281100AK109672.1-Conserved hypothetical protein3e+0At4g22110alcohol dehydrogenase, putativeO.I.H.G.S.X.
0.138.20.79Os04g0541700AK109177.1-Homeobox domain containing protein4e-2At2g46680ATHB-7 (ARABIDOPSIS THALIANA HOMEOBOX 7)O.I.H.G.S.X.
0.138.20.86Os04g0444800AK070312.1-Cytochrome b-245, heavy chain family protein7e-15At5g49740ATFRO7 (FERRIC REDUCTION OXIDASE 7)O.I.H.G.S.X.
0.127.20.85Os04g0668800AY224471.1-Putative thiol-disulphide oxidoreductase DCCfamily protein1e-7At5g50100-O.I.H.G.S.X.
0.084.20.83Os01g0898800AK106757.1-Conserved hypothetical protein4e-2At5g07540GRP16 (GLYCINE-RICH PROTEIN 16)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.898.7GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
13.798.5GSM377074Genomic DNA - 45 day old leaf sample - mutant g282GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
13.598.5GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
13.298.4GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
12.298.3GSM377082Genomic DNA - 45 day old leaf sample - mutant g9799GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
12.098.3GSM377078Genomic DNA - 45 day old leaf sample - mutant g6603GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.898.3GSM377085Genomic DNA - 45 day old leaf sample - mutant f2045GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.798.2GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.898.1GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.798.1GSM377086Genomic DNA - 45 day old leaf sample - IR64 wtcheckGSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.1051GO:0007585The process of gaseous exchange between an organism and its environment. In plants, microorganisms, and many small animals, air or water makes direct contact with the organism's cells or tissue fluids, and the processes of diffusion supply the organism with dioxygen (O2) and remove carbon dioxide (CO2). In larger animals the efficiency of gaseous exchange is improved by specialized respiratory organs, such as lungs and gills, which are ventilated by breathing mechanisms.Link to AmiGO
0.0831GO:0006352Any process involved in the assembly of the RNA polymerase complex at the promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter.Link to AmiGO
0.0471GO:0006813The directed movement of potassium ions (K+) into, out of, within or between cells.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage