CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0686800

Gene name
Homology with Arabidopsis Similar to At1g18080: ATARCA (HF=1e-23)

Module size 25 genes

NF 0.67

%ile 90.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 95.8 0.98 Os01g0686800 D38231.1 - Guanine nucleotide-binding protein betasubunit-like protein (GPB-LR) (RWD) 1e-23 At1g18080 ATARCA O.I. H.G. S.X.
0.82 95.0 0.98 Os12g0167900 D12630.1 - 60S ribosomal protein L3 1e-116 At1g43170 ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1) O.I. H.G. S.X.
0.78 93.4 0.98 Os04g0598200 BX897823 - 60S ribosomal protein L12 2e-21 At3g53430 60S ribosomal protein L12 (RPL12B) O.I. H.G. S.X.
0.77 93.1 0.99 Os02g0591700 AK072777.1 - Ribosomal protein L6 (Fragment) 9e-6 At1g74060 60S ribosomal protein L6 (RPL6B) O.I. H.G. S.X.
0.76 92.2 0.98 Os02g0478700 AK099723.1 - Ribosomal protein S27 (AT3g61110/T27I15_200) 4e-19 At3g61110 ARS27A (ARABIDOPSIS RIBOSOMAL PROTEIN S27) O.I. H.G. S.X.
0.76 92.2 0.98 Os02g0229000 AK058248.1 - 40S ribosomal protein S19-like 1e-13 At3g04920 40S ribosomal protein S24 (RPS24A) O.I. H.G. S.X.
0.74 91.4 0.98 Os11g0220800 AK060902.1 - 60S ribosomal protein L10 (QM protein homolog) 8e-71 At1g14320 SAC52 (SUPPRESSOR OF ACAULIS 52) O.I. H.G. S.X.
0.71 89.6 0.98 Os02g0814700 AK121994.1 - 60S ribosomal protein L17 [Oryza sativa (japonicacultivar-group)] 4e-78 At1g04480 60S ribosomal protein L23 (RPL23A) O.I. H.G. S.X.
0.70 88.4 0.98 Os11g0168200 AK073392.1 - 60S ribosomal protein L3 4e-95 At1g43170 ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1) O.I. H.G. S.X.
0.68 87.5 0.98 Os02g0821200 AK062099.1 - Ribosomal L28e protein family protein 9e-9 At2g19730 60S ribosomal protein L28 (RPL28A) O.I. H.G. S.X.
0.68 87.5 0.98 Os03g0807800 AK064984.1 - 40S ribosomal protein S2 2e-16 At3g57490 40S ribosomal protein S2 (RPS2D) O.I. H.G. S.X.
0.66 83.9 0.98 Os03g0577000 AK061051.1 - 40S ribosomal protein S3 8e-31 At5g35530 40S ribosomal protein S3 (RPS3C) O.I. H.G. S.X.
0.66 83.9 0.98 Os02g0534800 AK101459.1 - 40S ribosomal protein S14 (Clone MCH2) 3e-67 At3g11510 40S ribosomal protein S14 (RPS14B) O.I. H.G. S.X.
0.65 83.8 0.98 Os09g0568800 AK059234.1 - 40S ribosomal protein S25 3e-29 At2g21580 40S ribosomal protein S25 (RPS25B) O.I. H.G. S.X.
0.63 82.7 0.98 Os01g0205500 AK067763.1 - 60S ribosomal protein L11-2 (L16). Splice isoform2 1e-109 At4g18730 RPL16B O.I. H.G. S.X.
0.62 81.5 0.98 Os04g0430100 AB054123.1 - Plectin/S10, N-terminal domain containing protein 9e-18 At4g25740 40S ribosomal protein S10 (RPS10A) O.I. H.G. S.X.
0.61 81.2 0.98 Os05g0155100 AK120877.1 - 60S ribosomal protein L18 5e-4 At2g47570 60S ribosomal protein L18 (RPL18A) O.I. H.G. S.X.
0.61 81.2 0.98 Os03g0343500 AB117995.1 - 60S ribosomal protein L22-2 2e-24 At3g05560 60S ribosomal protein L22-2 (RPL22B) O.I. H.G. S.X.
0.60 79.7 0.98 Os07g0208000 AK062943.1 - 40S ribosomal protein S15a 7e-49 At1g07770 RPS15A (ribosomal protein s15a) O.I. H.G. S.X.
0.58 77.0 0.97 Os05g0565000 AK102673.1 - 60S ribosomal protein L18a-1 2e-86 At3g14600 60S ribosomal protein L18A (RPL18aC) O.I. H.G. S.X.
0.58 77.0 0.98 Os09g0507800 AK061725.1 - 60S ribosomal protein L7a 2e-86 At3g62870 60S ribosomal protein L7A (RPL7aB) O.I. H.G. S.X.
0.56 76.3 0.98 Os03g0598800 AK066806.1 - 60S ribosomal protein L15 5e-50 At4g17390 60S ribosomal protein L15 (RPL15B) O.I. H.G. S.X.
0.54 71.9 0.98 Os11g0127900 L36313.1 - 40S ribosomal protein S16 2e-9 At3g04230 40S ribosomal protein S16 (RPS16B) O.I. H.G. S.X.
0.52 69.6 0.98 Os03g0141000 AK120267.1 - 60S ribosomal protein L21 5e-21 At1g09690 60S ribosomal protein L21 (RPL21C) O.I. H.G. S.X.
0.52 69.6 0.98 Os03g0200500 AU183769 - - 2e-5 At3g04840 40S ribosomal protein S3A (RPS3aA) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.83	95.8	0.98	Os01g0686800	D38231.1	-	Guanine nucleotide-binding protein betasubunit-like protein (GPB-LR) (RWD)	1e-23	At1g18080	ATARCA	O.I.	H.G.	S.X.
0.82	95.0	0.98	Os12g0167900	D12630.1	-	60S ribosomal protein L3	1e-116	At1g43170	ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1)	O.I.	H.G.	S.X.
0.78	93.4	0.98	Os04g0598200	BX897823	-	60S ribosomal protein L12	2e-21	At3g53430	60S ribosomal protein L12 (RPL12B)	O.I.	H.G.	S.X.
0.77	93.1	0.99	Os02g0591700	AK072777.1	-	Ribosomal protein L6 (Fragment)	9e-6	At1g74060	60S ribosomal protein L6 (RPL6B)	O.I.	H.G.	S.X.
0.76	92.2	0.98	Os02g0478700	AK099723.1	-	Ribosomal protein S27 (AT3g61110/T27I15_200)	4e-19	At3g61110	ARS27A (ARABIDOPSIS RIBOSOMAL PROTEIN S27)	O.I.	H.G.	S.X.
0.76	92.2	0.98	Os02g0229000	AK058248.1	-	40S ribosomal protein S19-like	1e-13	At3g04920	40S ribosomal protein S24 (RPS24A)	O.I.	H.G.	S.X.
0.74	91.4	0.98	Os11g0220800	AK060902.1	-	60S ribosomal protein L10 (QM protein homolog)	8e-71	At1g14320	SAC52 (SUPPRESSOR OF ACAULIS 52)	O.I.	H.G.	S.X.
0.71	89.6	0.98	Os02g0814700	AK121994.1	-	60S ribosomal protein L17 [Oryza sativa (japonicacultivar-group)]	4e-78	At1g04480	60S ribosomal protein L23 (RPL23A)	O.I.	H.G.	S.X.
0.70	88.4	0.98	Os11g0168200	AK073392.1	-	60S ribosomal protein L3	4e-95	At1g43170	ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1)	O.I.	H.G.	S.X.
0.68	87.5	0.98	Os02g0821200	AK062099.1	-	Ribosomal L28e protein family protein	9e-9	At2g19730	60S ribosomal protein L28 (RPL28A)	O.I.	H.G.	S.X.
0.68	87.5	0.98	Os03g0807800	AK064984.1	-	40S ribosomal protein S2	2e-16	At3g57490	40S ribosomal protein S2 (RPS2D)	O.I.	H.G.	S.X.
0.66	83.9	0.98	Os03g0577000	AK061051.1	-	40S ribosomal protein S3	8e-31	At5g35530	40S ribosomal protein S3 (RPS3C)	O.I.	H.G.	S.X.
0.66	83.9	0.98	Os02g0534800	AK101459.1	-	40S ribosomal protein S14 (Clone MCH2)	3e-67	At3g11510	40S ribosomal protein S14 (RPS14B)	O.I.	H.G.	S.X.
0.65	83.8	0.98	Os09g0568800	AK059234.1	-	40S ribosomal protein S25	3e-29	At2g21580	40S ribosomal protein S25 (RPS25B)	O.I.	H.G.	S.X.
0.63	82.7	0.98	Os01g0205500	AK067763.1	-	60S ribosomal protein L11-2 (L16). Splice isoform2	1e-109	At4g18730	RPL16B	O.I.	H.G.	S.X.
0.62	81.5	0.98	Os04g0430100	AB054123.1	-	Plectin/S10, N-terminal domain containing protein	9e-18	At4g25740	40S ribosomal protein S10 (RPS10A)	O.I.	H.G.	S.X.
0.61	81.2	0.98	Os05g0155100	AK120877.1	-	60S ribosomal protein L18	5e-4	At2g47570	60S ribosomal protein L18 (RPL18A)	O.I.	H.G.	S.X.
0.61	81.2	0.98	Os03g0343500	AB117995.1	-	60S ribosomal protein L22-2	2e-24	At3g05560	60S ribosomal protein L22-2 (RPL22B)	O.I.	H.G.	S.X.
0.60	79.7	0.98	Os07g0208000	AK062943.1	-	40S ribosomal protein S15a	7e-49	At1g07770	RPS15A (ribosomal protein s15a)	O.I.	H.G.	S.X.
0.58	77.0	0.97	Os05g0565000	AK102673.1	-	60S ribosomal protein L18a-1	2e-86	At3g14600	60S ribosomal protein L18A (RPL18aC)	O.I.	H.G.	S.X.
0.58	77.0	0.98	Os09g0507800	AK061725.1	-	60S ribosomal protein L7a	2e-86	At3g62870	60S ribosomal protein L7A (RPL7aB)	O.I.	H.G.	S.X.
0.56	76.3	0.98	Os03g0598800	AK066806.1	-	60S ribosomal protein L15	5e-50	At4g17390	60S ribosomal protein L15 (RPL15B)	O.I.	H.G.	S.X.
0.54	71.9	0.98	Os11g0127900	L36313.1	-	40S ribosomal protein S16	2e-9	At3g04230	40S ribosomal protein S16 (RPS16B)	O.I.	H.G.	S.X.
0.52	69.6	0.98	Os03g0141000	AK120267.1	-	60S ribosomal protein L21	5e-21	At1g09690	60S ribosomal protein L21 (RPL21C)	O.I.	H.G.	S.X.
0.52	69.6	0.98	Os03g0200500	AU183769	-	-	2e-5	At3g04840	40S ribosomal protein S3A (RPS3aA)	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
24.7 99.4 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
14.7 98.6 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.1 98.4 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.7 98.4 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.3 98.3 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.3 98.3 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.6 98.2 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.1 98.2 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.1 98.2 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.8 98.1 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
24.7	99.4	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
14.7	98.6	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.1	98.4	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.7	98.4	GSM377072	Genomic DNA - 45 day old leaf sample - mutant d1137	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.3	98.3	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.3	98.3	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.6	98.2	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.1	98.2	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
11.1	98.2	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.8	98.1	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	Os01g0686800
Gene name
Homology with Arabidopsis	Similar to At1g18080: ATARCA (HF=1e-23)
Module size	25 genes
NF	0.67
%ile	90.0

Co-expression analysis

Gene ID Os01g0686800 Gene name Homology with ArabidopsisSimilar to At1g18080: ATARCA (HF=1e-23) Module size 25 genes NF 0.67 %ile 90.0

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os01g0686800

Gene name
Homology with Arabidopsis Similar to At1g18080: ATARCA (HF=1e-23)

Module size 25 genes

NF 0.67

%ile 90.0

SF Genes GO ID Process Name Link to AmiGO

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays