CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0686000

Gene name
Homology with Arabidopsis Similar to At5g52390: photoassimilate-responsive protein, putative (HF=6e+0)

Module size 13 genes

NF 0.37

%ile 43.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.73 91.1 0.83 Os01g0686000 AK110784.1 - Conserved hypothetical protein 6e+0 At5g52390 photoassimilate-responsive protein, putative O.I. H.G. S.X.
0.54 71.9 0.86 Os03g0184300 AK120569.1 - Glycosyl transferase, family 8 protein 3e-1 At4g33330 transferase, transferring glycosyl groups O.I. H.G. S.X.
0.50 68.0 0.88 Os09g0532900 AK106873.1 - Myb, DNA-binding domain containing protein 6e-32 At4g22680 MYB85 (myb domain protein 85) O.I. H.G. S.X.
0.48 63.7 0.88 Os02g0758800 AK071537.1 - Plastocyanin-like domain containing protein 5e-4 At2g21060 ATGRP2B (GLYCINE-RICH PROTEIN 2B) O.I. H.G. S.X.
0.47 62.3 0.88 Os03g0859900 AK072837.1 - Protein of unknown function DUF547 domaincontaining protein 7e-2 At5g55508 unknown protein O.I. H.G. S.X.
0.44 58.1 0.88 Os02g0722400 AK070030.1 - Amino acid transporter c (Fragment) 2e-4 At5g23810 AAP7 O.I. H.G. S.X.
0.39 48.3 0.90 Os02g0186900 9630.m00853 - Cytochrome P450 family protein 8e-1 At4g37410 CYP81F4 O.I. H.G. S.X.
0.33 38.8 0.86 Os03g0416200 AK069631.1 - BRITTLE CULM1 2e-11 At5g60920 COB (COBRA) O.I. H.G. S.X.
0.29 31.1 0.90 Os09g0500900 9637.m02845 - Protein of unknown function DUF568 domaincontaining protein 4e-2 At2g05510 glycine-rich protein O.I. H.G. S.X.
0.26 25.6 0.91 Os03g0775700 AK067093.1 - Conserved hypothetical protein 4e-1 At3g23633 - O.I. H.G. S.X.
0.25 24.1 0.88 Os08g0441500 AK102061.1 - Cinnamoyl-CoA reductase 2e+0 At1g15950 CCR1 (CINNAMOYL COA REDUCTASE 1) O.I. H.G. S.X.
0.21 17.9 0.86 Os06g0545900 AK070128.1 - - 9e-5 At1g29200 unknown protein O.I. H.G. S.X.
0.20 16.5 0.88 Os03g0577500 AK119639.1 - Avr9 elicitor response-like protein 2e-27 At1g05170 galactosyltransferase family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
31.2 99.7 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
10.2 98.0 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
9.3 97.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
7.8 97.6 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
7.3 97.5 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.6 97.3 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.5 97.2 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.3 97.2 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.0 97.0 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.8 97.0 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.067 1 GO:0016051 The chemical reactions and pathways resulting in the formation of carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y.
0.057 1 GO:0006486 The addition of a sugar unit to a protein amino acid, e.g. the addition of glycan chains to proteins.
0.036 1 GO:0006865 The directed movement of amino acids, organic acids containing one or more amino substituents, into, out of, within or between cells.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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