CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0680600

Gene name
Homology with Arabidopsis Similar to At5g23100: unknown protein (HF=1e-1)

Module size 6 genes

NF 0.21

%ile 19.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.61 81.2 0.97 Os01g0680600 NM_192046.1 - - 1e-1 At5g23100 unknown protein O.I. H.G. S.X.
0.55 73.7 0.97 Os06g0231400 AK120621.1 - Protein prenyltransferase domain containingprotein 2e-1 At1g09410 pentatricopeptide (PPR) repeat-containing protein O.I. H.G. S.X.
0.44 58.1 0.97 Os04g0118700 9632.m00192 - Protein prenyltransferase domain containingprotein 1e+0 At3g57430 pentatricopeptide (PPR) repeat-containing protein O.I. H.G. S.X.
0.32 36.3 0.97 Os06g0561100 CB622963 - - 8e-1 At3g44380 - O.I. H.G. S.X.
0.31 34.5 0.97 Os03g0133000 AK107090.1 - No apical meristem (NAM) protein domain containingprotein 4e-3 At2g17040 anac036 (Arabidopsis NAC domain containing protein 36) O.I. H.G. S.X.
0.07 3.7 0.96 Os01g0798800 AK064257.1 - - 1e-3 At5g45470 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.7 98.2 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.4 98.2 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.3 98.2 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.3 98.2 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1 98.0 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.7 98.0 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.7 97.8 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.6 97.5 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.2 97.4 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
6.9 97.3 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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