CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0675100

Gene name
Homology with Arabidopsis Similar to At1g65970: TPX2 (thioredoxin-dependent peroxidase 2) (HF=4e-1)

Module size 7 genes

NF 0.46

%ile 58.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.71 89.6 0.96 Os01g0675100 AF203879.1 - Peroxiredoxin 4e-1 At1g65970 TPX2 (thioredoxin-dependent peroxidase 2) O.I. H.G. S.X.
0.50 68.0 0.97 Os04g0498600 AF067194.1 - S- adenosylmethionine decarboxylase beta chain] 2e-5 At5g15948 CPuORF10 (Conserved peptide upstream open reading frame 10) O.I. H.G. S.X.
0.50 68.0 0.97 Os02g0760300 CB682356 - Immunophilin 2e-8 At5g64350 FKBP12 (FK506-BINDING PROTEIN) O.I. H.G. S.X.
0.46 60.9 0.97 Os03g0390600 AF467728.1 - Histone H3.3 5e-105 At4g40040 histone H3.2 O.I. H.G. S.X.
0.40 51.1 0.97 Os07g0545400 AK059228.1 - Protein H2A 4e-7 At5g54640 RAT5 (RESISTANT TO AGROBACTERIUM TRANSFORMATION 5) O.I. H.G. S.X.
0.36 44.0 0.97 Os05g0574500 AB015972.1 - GTP-binding nuclear protein RAN1B (Fragment) 1e-112 At5g20020 RAN2 O.I. H.G. S.X.
0.27 27.5 0.97 Os02g0121300 L29470.1 - Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8)(PPIase) (Rotamase) (Cyclophilin) (Cyclosporin A-bindingprotein) 9e-12 At4g38740 ROC1 (ROTAMASE CYP 1) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
48.1 99.9 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
38.4 99.8 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
24.4 99.4 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
3.9 95.8 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
3.4 95.2 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
3.3 95.1 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
3.1 94.8 GSM409432 9311_young panicle 2cm, biological rep3 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
3.0 94.6 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
3.0 94.6 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
2.9 94.5 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.048 1 GO:0051276 A process that is carried out at the cellular level that results in the assembly, arrangement of constituent parts, or disassembly of chromosomes, structures composed of a very long molecule of DNA and associated proteins that carries hereditary information.
0.048 2 GO:0006457 The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
0.047 1 GO:0006334 The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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