CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0668900

Gene name
Homology with Arabidopsis Similar to At4g13160: unknown protein (HF=5e-1)

Module size 6 genes

NF 0.62

%ile 84.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.73 91.1 0.99 Os01g0668900 AK110235.1 - Conserved hypothetical protein 5e-1 At4g13160 unknown protein O.I. H.G. S.X.
0.63 82.7 0.98 Os02g0707500 AK107442.1 - Conserved hypothetical protein 6e+0 At4g16240 unknown protein O.I. H.G. S.X.
0.60 79.7 0.98 Os01g0862500 AK120019.1 - IQ calmodulin-binding region domain containingprotein 3e+0 At5g23850 - O.I. H.G. S.X.
0.55 73.7 0.99 Os10g0318100 NM_195619.1 - - 1e+1 At5g62330 - O.I. H.G. S.X.
0.50 68.0 0.99 Os02g0524150 9630.m03070 - - 4e+0 At2g24860 chaperone protein dnaJ-related O.I. H.G. S.X.
0.43 55.4 0.99 Os01g0739850 9629.m05232 - - 6e-1 At3g23240 ERF1 (ETHYLENE RESPONSE FACTOR 1) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
25.4 99.5 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
24.3 99.4 GSM195224 Suspension cell GSE7951 Genome-wide gene expression profiling of rice stigma
14.0 98.5 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.5 98.3 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.4 98.3 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.2 98.3 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.2 98.3 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.5 98.2 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.0 98.2 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.9 98.1 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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